miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 5' -55.8 NC_005261.1 + 113873 0.66 0.908763
Target:  5'- gUGCuccggGUGCCACcuguagcggcgacgCGGcGGGCGCg -3'
miRNA:   3'- gACGucua-CAUGGUGa-------------GCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 100616 0.66 0.906294
Target:  5'- -cGCAGGUGcaggucCCGCUCGcacaGGCGCg -3'
miRNA:   3'- gaCGUCUACau----GGUGAGCcac-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 119630 0.66 0.906294
Target:  5'- aCUGCGGcGUGgccgacaacGCCAC-CGGcGGcGCGCg -3'
miRNA:   3'- -GACGUC-UACa--------UGGUGaGCCaCC-CGCG- -5'
23711 5' -55.8 NC_005261.1 + 52962 0.66 0.899954
Target:  5'- -aGCAGc---GCCGCgcCGGUGcGGCGCc -3'
miRNA:   3'- gaCGUCuacaUGGUGa-GCCAC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 48427 0.66 0.899954
Target:  5'- -aGCAGGcgGUACaGCUcgCGGUGcguGGCGCg -3'
miRNA:   3'- gaCGUCUa-CAUGgUGA--GCCAC---CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 81364 0.66 0.899954
Target:  5'- uUGCGGggGgcGCCggGCUCGcuggGGGCGCc -3'
miRNA:   3'- gACGUCuaCa-UGG--UGAGCca--CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 73931 0.66 0.892035
Target:  5'- aCUGC--GUGUGCCuGCUcCGGcuugcagacgcgGGGCGCg -3'
miRNA:   3'- -GACGucUACAUGG-UGA-GCCa-----------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 47413 0.66 0.88657
Target:  5'- gUGCAcacGcgGUACUcC-CGGUGGGCGa -3'
miRNA:   3'- gACGU---CuaCAUGGuGaGCCACCCGCg -5'
23711 5' -55.8 NC_005261.1 + 35010 0.66 0.879534
Target:  5'- cCUGCGG-UGcgGCCGgcguCUCGGUcgcuGGCGCg -3'
miRNA:   3'- -GACGUCuACa-UGGU----GAGCCAc---CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 24126 0.66 0.879534
Target:  5'- -gGCGGggGUGgggGCUgGGUGGGCGg -3'
miRNA:   3'- gaCGUCuaCAUgg-UGAgCCACCCGCg -5'
23711 5' -55.8 NC_005261.1 + 75816 0.67 0.872273
Target:  5'- -cGCuGGUGcccggcgcgGCCGCgccCGGggagGGGCGCg -3'
miRNA:   3'- gaCGuCUACa--------UGGUGa--GCCa---CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 116355 0.67 0.867812
Target:  5'- gUGCGGGUucguccGUGCCGCcgcgcgcaaugccgaUCGGgGGGcCGCg -3'
miRNA:   3'- gACGUCUA------CAUGGUG---------------AGCCaCCC-GCG- -5'
23711 5' -55.8 NC_005261.1 + 115805 0.67 0.864794
Target:  5'- -aGCGGAUGagGCuCACgcacacgCGGUgcgccagcuuGGGCGCg -3'
miRNA:   3'- gaCGUCUACa-UG-GUGa------GCCA----------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 73785 0.67 0.864794
Target:  5'- cCUGC-GAcGUGCgCGCggCGGUcGGCGCg -3'
miRNA:   3'- -GACGuCUaCAUG-GUGa-GCCAcCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 108878 0.67 0.849204
Target:  5'- -aGCGGGUGgacgacgGCCGCgcugcccgcCGGcgagcgGGGCGCg -3'
miRNA:   3'- gaCGUCUACa------UGGUGa--------GCCa-----CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 46815 0.67 0.841106
Target:  5'- -cGCGGAUGgcgcgcGCCaggcgcgcguGCUCGGgaacgaggUGGGCGUa -3'
miRNA:   3'- gaCGUCUACa-----UGG----------UGAGCC--------ACCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 43248 0.68 0.82775
Target:  5'- gCUGCAGAUGU--CGCUCGuugagugcguucgGGGCGUc -3'
miRNA:   3'- -GACGUCUACAugGUGAGCca-----------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 46478 0.68 0.824338
Target:  5'- -cGCAGGUGca--GCUCGGcgcccuccgcgGGGCGCa -3'
miRNA:   3'- gaCGUCUACauggUGAGCCa----------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 89178 0.68 0.824338
Target:  5'- -cGCGGAcaaccUGgaGCCGCUCGc-GGGCGCc -3'
miRNA:   3'- gaCGUCU-----ACa-UGGUGAGCcaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 96835 0.68 0.82176
Target:  5'- -gGCGG-UGUcgagGCCggggucgacgggggGCUCGGgGGGCGCg -3'
miRNA:   3'- gaCGUCuACA----UGG--------------UGAGCCaCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.