miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 5' -55.8 NC_005261.1 + 83306 0.68 0.815684
Target:  5'- -cGCGGGgucGUGCaGCUCGG-GcGGCGCc -3'
miRNA:   3'- gaCGUCUa--CAUGgUGAGCCaC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 45444 0.68 0.815684
Target:  5'- -cGCaAGAUGaGCCagcuGCUCuacGUGGGCGCc -3'
miRNA:   3'- gaCG-UCUACaUGG----UGAGc--CACCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 121055 0.68 0.815684
Target:  5'- -cGCGGuUGUGgCGCgCGGUGuGCGCg -3'
miRNA:   3'- gaCGUCuACAUgGUGaGCCACcCGCG- -5'
23711 5' -55.8 NC_005261.1 + 32163 0.68 0.80686
Target:  5'- gCUGCGGccgGUGUACCuggcCUgCGG-GcGGCGCg -3'
miRNA:   3'- -GACGUC---UACAUGGu---GA-GCCaC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 133553 0.68 0.797876
Target:  5'- -cGCAGca-UGCUGCUCGGgGGGCGg -3'
miRNA:   3'- gaCGUCuacAUGGUGAGCCaCCCGCg -5'
23711 5' -55.8 NC_005261.1 + 98077 0.68 0.797876
Target:  5'- -gGCGGGUGUGUC-CUUGGagaaucuggGGGCGCg -3'
miRNA:   3'- gaCGUCUACAUGGuGAGCCa--------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 56116 0.68 0.797876
Target:  5'- -aGCGGcgGgagcgcGCCGCagggCGGgGGGCGCg -3'
miRNA:   3'- gaCGUCuaCa-----UGGUGa---GCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 13097 0.68 0.788739
Target:  5'- -gGCGGcgGgcuCgGCUCGG-GGGCGUc -3'
miRNA:   3'- gaCGUCuaCau-GgUGAGCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 57592 0.68 0.779459
Target:  5'- -cGCGucGAUGUGCCACcUGGc-GGCGCa -3'
miRNA:   3'- gaCGU--CUACAUGGUGaGCCacCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 117937 0.69 0.750852
Target:  5'- gCUGCGGcccGUGCgCGCUCGcugcuacGGGCGCg -3'
miRNA:   3'- -GACGUCua-CAUG-GUGAGCca-----CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 135777 0.69 0.741091
Target:  5'- -cGCAGAgcgcGUGCCGCugUCGGaggugaccgUGGGCGa -3'
miRNA:   3'- gaCGUCUa---CAUGGUG--AGCC---------ACCCGCg -5'
23711 5' -55.8 NC_005261.1 + 79587 0.69 0.731234
Target:  5'- -aGCGGAaGUAgCGCUugUGGUugaGGGCGCa -3'
miRNA:   3'- gaCGUCUaCAUgGUGA--GCCA---CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 111957 0.69 0.730243
Target:  5'- -aGgAGAUGUACCuggccaaGCUCGaaggcgGGGCGCu -3'
miRNA:   3'- gaCgUCUACAUGG-------UGAGCca----CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 13644 0.7 0.711268
Target:  5'- -cGCGGAagcgcgcgccGUGCCGCcgccgCGGgggGGGCGCg -3'
miRNA:   3'- gaCGUCUa---------CAUGGUGa----GCCa--CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 106925 0.7 0.700165
Target:  5'- gCUGCAGGgccGCCAgcgacacgcgcacCUCGGcccGGGCGCg -3'
miRNA:   3'- -GACGUCUacaUGGU-------------GAGCCa--CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 82664 0.71 0.660317
Target:  5'- -cGCGGAUGagcgccucgaGCCGCUCGucGGGCGCc -3'
miRNA:   3'- gaCGUCUACa---------UGGUGAGCcaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 118342 0.71 0.650022
Target:  5'- cCUGCGGGcUGcuccucgGCCuCUCGGccGGGCGCu -3'
miRNA:   3'- -GACGUCU-ACa------UGGuGAGCCa-CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 20449 0.71 0.650022
Target:  5'- -cGCAGAcGUGcCCGCgcgGGUGuGGCGCu -3'
miRNA:   3'- gaCGUCUaCAU-GGUGag-CCAC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 72605 0.72 0.578009
Target:  5'- -cGCAaAUGUACCGggCGGgcGGGCGCa -3'
miRNA:   3'- gaCGUcUACAUGGUgaGCCa-CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 9650 0.72 0.557678
Target:  5'- -gGCGGGgc--CCACUCGGgcGGGCGCc -3'
miRNA:   3'- gaCGUCUacauGGUGAGCCa-CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.