Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23711 | 5' | -55.8 | NC_005261.1 | + | 19109 | 0.74 | 0.478893 |
Target: 5'- uUGCGGGUcaGCCGgUCGGUGGG-GCu -3' miRNA: 3'- gACGUCUAcaUGGUgAGCCACCCgCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 28253 | 0.75 | 0.397352 |
Target: 5'- -aGCGGGg--GCUGCUCGGggGGGCGCu -3' miRNA: 3'- gaCGUCUacaUGGUGAGCCa-CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 118499 | 0.76 | 0.388853 |
Target: 5'- gCUGCGGAcccUGgcGCCGCUCGGcGaGGCGCc -3' miRNA: 3'- -GACGUCU---ACa-UGGUGAGCCaC-CCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 45728 | 0.76 | 0.364084 |
Target: 5'- -cGCAG-UGUACCACU-GGUGGacGCGCa -3' miRNA: 3'- gaCGUCuACAUGGUGAgCCACC--CGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 98170 | 0.76 | 0.356074 |
Target: 5'- -gGCGGGUGUguccuuggaGCCGC-CGG-GGGCGCg -3' miRNA: 3'- gaCGUCUACA---------UGGUGaGCCaCCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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