miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 5' -55.8 NC_005261.1 + 9650 0.72 0.557678
Target:  5'- -gGCGGGgc--CCACUCGGgcGGGCGCc -3'
miRNA:   3'- gaCGUCUacauGGUGAGCCa-CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 13097 0.68 0.788739
Target:  5'- -gGCGGcgGgcuCgGCUCGG-GGGCGUc -3'
miRNA:   3'- gaCGUCuaCau-GgUGAGCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 13644 0.7 0.711268
Target:  5'- -cGCGGAagcgcgcgccGUGCCGCcgccgCGGgggGGGCGCg -3'
miRNA:   3'- gaCGUCUa---------CAUGGUGa----GCCa--CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 19109 0.74 0.478893
Target:  5'- uUGCGGGUcaGCCGgUCGGUGGG-GCu -3'
miRNA:   3'- gACGUCUAcaUGGUgAGCCACCCgCG- -5'
23711 5' -55.8 NC_005261.1 + 20449 0.71 0.650022
Target:  5'- -cGCAGAcGUGcCCGCgcgGGUGuGGCGCu -3'
miRNA:   3'- gaCGUCUaCAU-GGUGag-CCAC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 24126 0.66 0.879534
Target:  5'- -gGCGGggGUGgggGCUgGGUGGGCGg -3'
miRNA:   3'- gaCGUCuaCAUgg-UGAgCCACCCGCg -5'
23711 5' -55.8 NC_005261.1 + 28253 0.75 0.397352
Target:  5'- -aGCGGGg--GCUGCUCGGggGGGCGCu -3'
miRNA:   3'- gaCGUCUacaUGGUGAGCCa-CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 32163 0.68 0.80686
Target:  5'- gCUGCGGccgGUGUACCuggcCUgCGG-GcGGCGCg -3'
miRNA:   3'- -GACGUC---UACAUGGu---GA-GCCaC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 35010 0.66 0.879534
Target:  5'- cCUGCGG-UGcgGCCGgcguCUCGGUcgcuGGCGCg -3'
miRNA:   3'- -GACGUCuACa-UGGU----GAGCCAc---CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 43248 0.68 0.82775
Target:  5'- gCUGCAGAUGU--CGCUCGuugagugcguucgGGGCGUc -3'
miRNA:   3'- -GACGUCUACAugGUGAGCca-----------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 45444 0.68 0.815684
Target:  5'- -cGCaAGAUGaGCCagcuGCUCuacGUGGGCGCc -3'
miRNA:   3'- gaCG-UCUACaUGG----UGAGc--CACCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 45728 0.76 0.364084
Target:  5'- -cGCAG-UGUACCACU-GGUGGacGCGCa -3'
miRNA:   3'- gaCGUCuACAUGGUGAgCCACC--CGCG- -5'
23711 5' -55.8 NC_005261.1 + 46478 0.68 0.824338
Target:  5'- -cGCAGGUGca--GCUCGGcgcccuccgcgGGGCGCa -3'
miRNA:   3'- gaCGUCUACauggUGAGCCa----------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 46815 0.67 0.841106
Target:  5'- -cGCGGAUGgcgcgcGCCaggcgcgcguGCUCGGgaacgaggUGGGCGUa -3'
miRNA:   3'- gaCGUCUACa-----UGG----------UGAGCC--------ACCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 47413 0.66 0.88657
Target:  5'- gUGCAcacGcgGUACUcC-CGGUGGGCGa -3'
miRNA:   3'- gACGU---CuaCAUGGuGaGCCACCCGCg -5'
23711 5' -55.8 NC_005261.1 + 48427 0.66 0.899954
Target:  5'- -aGCAGGcgGUACaGCUcgCGGUGcguGGCGCg -3'
miRNA:   3'- gaCGUCUa-CAUGgUGA--GCCAC---CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 52962 0.66 0.899954
Target:  5'- -aGCAGc---GCCGCgcCGGUGcGGCGCc -3'
miRNA:   3'- gaCGUCuacaUGGUGa-GCCAC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 56116 0.68 0.797876
Target:  5'- -aGCGGcgGgagcgcGCCGCagggCGGgGGGCGCg -3'
miRNA:   3'- gaCGUCuaCa-----UGGUGa---GCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 57592 0.68 0.779459
Target:  5'- -cGCGucGAUGUGCCACcUGGc-GGCGCa -3'
miRNA:   3'- gaCGU--CUACAUGGUGaGCCacCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 72605 0.72 0.578009
Target:  5'- -cGCAaAUGUACCGggCGGgcGGGCGCa -3'
miRNA:   3'- gaCGUcUACAUGGUgaGCCa-CCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.