Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23711 | 5' | -55.8 | NC_005261.1 | + | 73785 | 0.67 | 0.864794 |
Target: 5'- cCUGC-GAcGUGCgCGCggCGGUcGGCGCg -3' miRNA: 3'- -GACGuCUaCAUG-GUGa-GCCAcCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 73931 | 0.66 | 0.892035 |
Target: 5'- aCUGC--GUGUGCCuGCUcCGGcuugcagacgcgGGGCGCg -3' miRNA: 3'- -GACGucUACAUGG-UGA-GCCa-----------CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 75816 | 0.67 | 0.872273 |
Target: 5'- -cGCuGGUGcccggcgcgGCCGCgccCGGggagGGGCGCg -3' miRNA: 3'- gaCGuCUACa--------UGGUGa--GCCa---CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 79587 | 0.69 | 0.731234 |
Target: 5'- -aGCGGAaGUAgCGCUugUGGUugaGGGCGCa -3' miRNA: 3'- gaCGUCUaCAUgGUGA--GCCA---CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 81364 | 0.66 | 0.899954 |
Target: 5'- uUGCGGggGgcGCCggGCUCGcuggGGGCGCc -3' miRNA: 3'- gACGUCuaCa-UGG--UGAGCca--CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 82664 | 0.71 | 0.660317 |
Target: 5'- -cGCGGAUGagcgccucgaGCCGCUCGucGGGCGCc -3' miRNA: 3'- gaCGUCUACa---------UGGUGAGCcaCCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 83306 | 0.68 | 0.815684 |
Target: 5'- -cGCGGGgucGUGCaGCUCGG-GcGGCGCc -3' miRNA: 3'- gaCGUCUa--CAUGgUGAGCCaC-CCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 89178 | 0.68 | 0.824338 |
Target: 5'- -cGCGGAcaaccUGgaGCCGCUCGc-GGGCGCc -3' miRNA: 3'- gaCGUCU-----ACa-UGGUGAGCcaCCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 96835 | 0.68 | 0.82176 |
Target: 5'- -gGCGG-UGUcgagGCCggggucgacgggggGCUCGGgGGGCGCg -3' miRNA: 3'- gaCGUCuACA----UGG--------------UGAGCCaCCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 98077 | 0.68 | 0.797876 |
Target: 5'- -gGCGGGUGUGUC-CUUGGagaaucuggGGGCGCg -3' miRNA: 3'- gaCGUCUACAUGGuGAGCCa--------CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 98170 | 0.76 | 0.356074 |
Target: 5'- -gGCGGGUGUguccuuggaGCCGC-CGG-GGGCGCg -3' miRNA: 3'- gaCGUCUACA---------UGGUGaGCCaCCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 100616 | 0.66 | 0.906294 |
Target: 5'- -cGCAGGUGcaggucCCGCUCGcacaGGCGCg -3' miRNA: 3'- gaCGUCUACau----GGUGAGCcac-CCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 106925 | 0.7 | 0.700165 |
Target: 5'- gCUGCAGGgccGCCAgcgacacgcgcacCUCGGcccGGGCGCg -3' miRNA: 3'- -GACGUCUacaUGGU-------------GAGCCa--CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 108878 | 0.67 | 0.849204 |
Target: 5'- -aGCGGGUGgacgacgGCCGCgcugcccgcCGGcgagcgGGGCGCg -3' miRNA: 3'- gaCGUCUACa------UGGUGa--------GCCa-----CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 111957 | 0.69 | 0.730243 |
Target: 5'- -aGgAGAUGUACCuggccaaGCUCGaaggcgGGGCGCu -3' miRNA: 3'- gaCgUCUACAUGG-------UGAGCca----CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 113873 | 0.66 | 0.908763 |
Target: 5'- gUGCuccggGUGCCACcuguagcggcgacgCGGcGGGCGCg -3' miRNA: 3'- gACGucua-CAUGGUGa-------------GCCaCCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 115805 | 0.67 | 0.864794 |
Target: 5'- -aGCGGAUGagGCuCACgcacacgCGGUgcgccagcuuGGGCGCg -3' miRNA: 3'- gaCGUCUACa-UG-GUGa------GCCA----------CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 116355 | 0.67 | 0.867812 |
Target: 5'- gUGCGGGUucguccGUGCCGCcgcgcgcaaugccgaUCGGgGGGcCGCg -3' miRNA: 3'- gACGUCUA------CAUGGUG---------------AGCCaCCC-GCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 117937 | 0.69 | 0.750852 |
Target: 5'- gCUGCGGcccGUGCgCGCUCGcugcuacGGGCGCg -3' miRNA: 3'- -GACGUCua-CAUG-GUGAGCca-----CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 118342 | 0.71 | 0.650022 |
Target: 5'- cCUGCGGGcUGcuccucgGCCuCUCGGccGGGCGCu -3' miRNA: 3'- -GACGUCU-ACa------UGGuGAGCCa-CCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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