miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23711 5' -55.8 NC_005261.1 + 135777 0.69 0.741091
Target:  5'- -cGCAGAgcgcGUGCCGCugUCGGaggugaccgUGGGCGa -3'
miRNA:   3'- gaCGUCUa---CAUGGUG--AGCC---------ACCCGCg -5'
23711 5' -55.8 NC_005261.1 + 133553 0.68 0.797876
Target:  5'- -cGCAGca-UGCUGCUCGGgGGGCGg -3'
miRNA:   3'- gaCGUCuacAUGGUGAGCCaCCCGCg -5'
23711 5' -55.8 NC_005261.1 + 121055 0.68 0.815684
Target:  5'- -cGCGGuUGUGgCGCgCGGUGuGCGCg -3'
miRNA:   3'- gaCGUCuACAUgGUGaGCCACcCGCG- -5'
23711 5' -55.8 NC_005261.1 + 119630 0.66 0.906294
Target:  5'- aCUGCGGcGUGgccgacaacGCCAC-CGGcGGcGCGCg -3'
miRNA:   3'- -GACGUC-UACa--------UGGUGaGCCaCC-CGCG- -5'
23711 5' -55.8 NC_005261.1 + 118499 0.76 0.388853
Target:  5'- gCUGCGGAcccUGgcGCCGCUCGGcGaGGCGCc -3'
miRNA:   3'- -GACGUCU---ACa-UGGUGAGCCaC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 118342 0.71 0.650022
Target:  5'- cCUGCGGGcUGcuccucgGCCuCUCGGccGGGCGCu -3'
miRNA:   3'- -GACGUCU-ACa------UGGuGAGCCa-CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 117937 0.69 0.750852
Target:  5'- gCUGCGGcccGUGCgCGCUCGcugcuacGGGCGCg -3'
miRNA:   3'- -GACGUCua-CAUG-GUGAGCca-----CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 116355 0.67 0.867812
Target:  5'- gUGCGGGUucguccGUGCCGCcgcgcgcaaugccgaUCGGgGGGcCGCg -3'
miRNA:   3'- gACGUCUA------CAUGGUG---------------AGCCaCCC-GCG- -5'
23711 5' -55.8 NC_005261.1 + 115805 0.67 0.864794
Target:  5'- -aGCGGAUGagGCuCACgcacacgCGGUgcgccagcuuGGGCGCg -3'
miRNA:   3'- gaCGUCUACa-UG-GUGa------GCCA----------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 113873 0.66 0.908763
Target:  5'- gUGCuccggGUGCCACcuguagcggcgacgCGGcGGGCGCg -3'
miRNA:   3'- gACGucua-CAUGGUGa-------------GCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 111957 0.69 0.730243
Target:  5'- -aGgAGAUGUACCuggccaaGCUCGaaggcgGGGCGCu -3'
miRNA:   3'- gaCgUCUACAUGG-------UGAGCca----CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 108878 0.67 0.849204
Target:  5'- -aGCGGGUGgacgacgGCCGCgcugcccgcCGGcgagcgGGGCGCg -3'
miRNA:   3'- gaCGUCUACa------UGGUGa--------GCCa-----CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 106925 0.7 0.700165
Target:  5'- gCUGCAGGgccGCCAgcgacacgcgcacCUCGGcccGGGCGCg -3'
miRNA:   3'- -GACGUCUacaUGGU-------------GAGCCa--CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 100616 0.66 0.906294
Target:  5'- -cGCAGGUGcaggucCCGCUCGcacaGGCGCg -3'
miRNA:   3'- gaCGUCUACau----GGUGAGCcac-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 98170 0.76 0.356074
Target:  5'- -gGCGGGUGUguccuuggaGCCGC-CGG-GGGCGCg -3'
miRNA:   3'- gaCGUCUACA---------UGGUGaGCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 98077 0.68 0.797876
Target:  5'- -gGCGGGUGUGUC-CUUGGagaaucuggGGGCGCg -3'
miRNA:   3'- gaCGUCUACAUGGuGAGCCa--------CCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 96835 0.68 0.82176
Target:  5'- -gGCGG-UGUcgagGCCggggucgacgggggGCUCGGgGGGCGCg -3'
miRNA:   3'- gaCGUCuACA----UGG--------------UGAGCCaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 89178 0.68 0.824338
Target:  5'- -cGCGGAcaaccUGgaGCCGCUCGc-GGGCGCc -3'
miRNA:   3'- gaCGUCU-----ACa-UGGUGAGCcaCCCGCG- -5'
23711 5' -55.8 NC_005261.1 + 83306 0.68 0.815684
Target:  5'- -cGCGGGgucGUGCaGCUCGG-GcGGCGCc -3'
miRNA:   3'- gaCGUCUa--CAUGgUGAGCCaC-CCGCG- -5'
23711 5' -55.8 NC_005261.1 + 82664 0.71 0.660317
Target:  5'- -cGCGGAUGagcgccucgaGCCGCUCGucGGGCGCc -3'
miRNA:   3'- gaCGUCUACa---------UGGUGAGCcaCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.