Results 21 - 40 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23711 | 5' | -55.8 | NC_005261.1 | + | 81364 | 0.66 | 0.899954 |
Target: 5'- uUGCGGggGgcGCCggGCUCGcuggGGGCGCc -3' miRNA: 3'- gACGUCuaCa-UGG--UGAGCca--CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 79587 | 0.69 | 0.731234 |
Target: 5'- -aGCGGAaGUAgCGCUugUGGUugaGGGCGCa -3' miRNA: 3'- gaCGUCUaCAUgGUGA--GCCA---CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 75816 | 0.67 | 0.872273 |
Target: 5'- -cGCuGGUGcccggcgcgGCCGCgccCGGggagGGGCGCg -3' miRNA: 3'- gaCGuCUACa--------UGGUGa--GCCa---CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 73931 | 0.66 | 0.892035 |
Target: 5'- aCUGC--GUGUGCCuGCUcCGGcuugcagacgcgGGGCGCg -3' miRNA: 3'- -GACGucUACAUGG-UGA-GCCa-----------CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 73785 | 0.67 | 0.864794 |
Target: 5'- cCUGC-GAcGUGCgCGCggCGGUcGGCGCg -3' miRNA: 3'- -GACGuCUaCAUG-GUGa-GCCAcCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 72605 | 0.72 | 0.578009 |
Target: 5'- -cGCAaAUGUACCGggCGGgcGGGCGCa -3' miRNA: 3'- gaCGUcUACAUGGUgaGCCa-CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 57592 | 0.68 | 0.779459 |
Target: 5'- -cGCGucGAUGUGCCACcUGGc-GGCGCa -3' miRNA: 3'- gaCGU--CUACAUGGUGaGCCacCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 56116 | 0.68 | 0.797876 |
Target: 5'- -aGCGGcgGgagcgcGCCGCagggCGGgGGGCGCg -3' miRNA: 3'- gaCGUCuaCa-----UGGUGa---GCCaCCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 52962 | 0.66 | 0.899954 |
Target: 5'- -aGCAGc---GCCGCgcCGGUGcGGCGCc -3' miRNA: 3'- gaCGUCuacaUGGUGa-GCCAC-CCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 48427 | 0.66 | 0.899954 |
Target: 5'- -aGCAGGcgGUACaGCUcgCGGUGcguGGCGCg -3' miRNA: 3'- gaCGUCUa-CAUGgUGA--GCCAC---CCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 47413 | 0.66 | 0.88657 |
Target: 5'- gUGCAcacGcgGUACUcC-CGGUGGGCGa -3' miRNA: 3'- gACGU---CuaCAUGGuGaGCCACCCGCg -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 46815 | 0.67 | 0.841106 |
Target: 5'- -cGCGGAUGgcgcgcGCCaggcgcgcguGCUCGGgaacgaggUGGGCGUa -3' miRNA: 3'- gaCGUCUACa-----UGG----------UGAGCC--------ACCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 46478 | 0.68 | 0.824338 |
Target: 5'- -cGCAGGUGca--GCUCGGcgcccuccgcgGGGCGCa -3' miRNA: 3'- gaCGUCUACauggUGAGCCa----------CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 45728 | 0.76 | 0.364084 |
Target: 5'- -cGCAG-UGUACCACU-GGUGGacGCGCa -3' miRNA: 3'- gaCGUCuACAUGGUGAgCCACC--CGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 45444 | 0.68 | 0.815684 |
Target: 5'- -cGCaAGAUGaGCCagcuGCUCuacGUGGGCGCc -3' miRNA: 3'- gaCG-UCUACaUGG----UGAGc--CACCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 43248 | 0.68 | 0.82775 |
Target: 5'- gCUGCAGAUGU--CGCUCGuugagugcguucgGGGCGUc -3' miRNA: 3'- -GACGUCUACAugGUGAGCca-----------CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 35010 | 0.66 | 0.879534 |
Target: 5'- cCUGCGG-UGcgGCCGgcguCUCGGUcgcuGGCGCg -3' miRNA: 3'- -GACGUCuACa-UGGU----GAGCCAc---CCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 32163 | 0.68 | 0.80686 |
Target: 5'- gCUGCGGccgGUGUACCuggcCUgCGG-GcGGCGCg -3' miRNA: 3'- -GACGUC---UACAUGGu---GA-GCCaC-CCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 28253 | 0.75 | 0.397352 |
Target: 5'- -aGCGGGg--GCUGCUCGGggGGGCGCu -3' miRNA: 3'- gaCGUCUacaUGGUGAGCCa-CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 24126 | 0.66 | 0.879534 |
Target: 5'- -gGCGGggGUGgggGCUgGGUGGGCGg -3' miRNA: 3'- gaCGUCuaCAUgg-UGAgCCACCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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