Results 41 - 45 of 45 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23711 | 5' | -55.8 | NC_005261.1 | + | 117937 | 0.69 | 0.750852 |
Target: 5'- gCUGCGGcccGUGCgCGCUCGcugcuacGGGCGCg -3' miRNA: 3'- -GACGUCua-CAUG-GUGAGCca-----CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 135777 | 0.69 | 0.741091 |
Target: 5'- -cGCAGAgcgcGUGCCGCugUCGGaggugaccgUGGGCGa -3' miRNA: 3'- gaCGUCUa---CAUGGUG--AGCC---------ACCCGCg -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 79587 | 0.69 | 0.731234 |
Target: 5'- -aGCGGAaGUAgCGCUugUGGUugaGGGCGCa -3' miRNA: 3'- gaCGUCUaCAUgGUGA--GCCA---CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 111957 | 0.69 | 0.730243 |
Target: 5'- -aGgAGAUGUACCuggccaaGCUCGaaggcgGGGCGCu -3' miRNA: 3'- gaCgUCUACAUGG-------UGAGCca----CCCGCG- -5' |
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23711 | 5' | -55.8 | NC_005261.1 | + | 98170 | 0.76 | 0.356074 |
Target: 5'- -gGCGGGUGUguccuuggaGCCGC-CGG-GGGCGCg -3' miRNA: 3'- gaCGUCUACA---------UGGUGaGCCaCCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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