miRNA display CGI


Results 1 - 20 of 412 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23712 3' -60.2 NC_005261.1 + 45940 0.66 0.725177
Target:  5'- gCCGCGCGCgagGGCCgccaggGCGccGUugAGCAuGCGc -3'
miRNA:   3'- -GGUGCGCGa--CCGGa-----CGC--CG--UCGU-UGC- -5'
23712 3' -60.2 NC_005261.1 + 16715 0.66 0.725177
Target:  5'- gCGCGCGCcgguacUGGCCcuCGGCgAGCcGCGc -3'
miRNA:   3'- gGUGCGCG------ACCGGacGCCG-UCGuUGC- -5'
23712 3' -60.2 NC_005261.1 + 134360 0.66 0.725177
Target:  5'- gCCGcCGCGCgGGgg-GCGGCgccgcuGGCGACGg -3'
miRNA:   3'- -GGU-GCGCGaCCggaCGCCG------UCGUUGC- -5'
23712 3' -60.2 NC_005261.1 + 98131 0.66 0.725177
Target:  5'- gCCGCG-GCaccggcGGCCgucgGCGGCaaggccgcgGGCGGCGg -3'
miRNA:   3'- -GGUGCgCGa-----CCGGa---CGCCG---------UCGUUGC- -5'
23712 3' -60.2 NC_005261.1 + 76324 0.66 0.725177
Target:  5'- aCCucCGCGgU-GUaaGCGGCGGCAGCGc -3'
miRNA:   3'- -GGu-GCGCgAcCGgaCGCCGUCGUUGC- -5'
23712 3' -60.2 NC_005261.1 + 74266 0.66 0.725177
Target:  5'- uUCGCGCGCgcgcGUCcGCGGCGGgCGggGCGg -3'
miRNA:   3'- -GGUGCGCGac--CGGaCGCCGUC-GU--UGC- -5'
23712 3' -60.2 NC_005261.1 + 39887 0.66 0.725177
Target:  5'- gCCGCGCGCgcGGCUgUGCaGCuGGCGcgcGCGg -3'
miRNA:   3'- -GGUGCGCGa-CCGG-ACGcCG-UCGU---UGC- -5'
23712 3' -60.2 NC_005261.1 + 135500 0.66 0.725177
Target:  5'- -gACGCGCUGGCCU----CAGcCGACGa -3'
miRNA:   3'- ggUGCGCGACCGGAcgccGUC-GUUGC- -5'
23712 3' -60.2 NC_005261.1 + 134494 0.66 0.72421
Target:  5'- gUCGCGCuGCUGcacuacgagcacaGCCUGCGccuGCAGCuGCu -3'
miRNA:   3'- -GGUGCG-CGAC-------------CGGACGC---CGUCGuUGc -5'
23712 3' -60.2 NC_005261.1 + 74169 0.66 0.72421
Target:  5'- gCGCGUGCUcaaggugacGcGCCUGcCGGCucagaccaucgccAGCAACGc -3'
miRNA:   3'- gGUGCGCGA---------C-CGGAC-GCCG-------------UCGUUGC- -5'
23712 3' -60.2 NC_005261.1 + 103913 0.66 0.72421
Target:  5'- cCCGCGcCGCcaGGUCgggcGCGGCGucugccagacgcuGCAGCGg -3'
miRNA:   3'- -GGUGC-GCGa-CCGGa---CGCCGU-------------CGUUGC- -5'
23712 3' -60.2 NC_005261.1 + 66302 0.66 0.715468
Target:  5'- gUCAgGCGCggcacGGCCaccgagGCGGCcguGCAGCc -3'
miRNA:   3'- -GGUgCGCGa----CCGGa-----CGCCGu--CGUUGc -5'
23712 3' -60.2 NC_005261.1 + 67067 0.66 0.715468
Target:  5'- gCGCGCGCgggGGCUcgcucggGCGGUccauggcGCGACGc -3'
miRNA:   3'- gGUGCGCGa--CCGGa------CGCCGu------CGUUGC- -5'
23712 3' -60.2 NC_005261.1 + 67664 0.66 0.715468
Target:  5'- uCCGCGCGCgGcGCCaggcGCGGUgAGC-GCGu -3'
miRNA:   3'- -GGUGCGCGaC-CGGa---CGCCG-UCGuUGC- -5'
23712 3' -60.2 NC_005261.1 + 97181 0.66 0.715468
Target:  5'- gCGgGCGCcGGCCgggccGCGGCcggaAGCGccGCGg -3'
miRNA:   3'- gGUgCGCGaCCGGa----CGCCG----UCGU--UGC- -5'
23712 3' -60.2 NC_005261.1 + 118621 0.66 0.715468
Target:  5'- cCguUGCcCUGGCCgccGCGGCGGCGc-- -3'
miRNA:   3'- -GguGCGcGACCGGa--CGCCGUCGUugc -5'
23712 3' -60.2 NC_005261.1 + 65848 0.66 0.715468
Target:  5'- gCCGCGaguaGC-GGUCcGCGGCGGCuuguACa -3'
miRNA:   3'- -GGUGCg---CGaCCGGaCGCCGUCGu---UGc -5'
23712 3' -60.2 NC_005261.1 + 76041 0.66 0.715468
Target:  5'- cCCGCGCGCcaucagcgUGGCCgGCgGGCGcCAccaggGCGg -3'
miRNA:   3'- -GGUGCGCG--------ACCGGaCG-CCGUcGU-----UGC- -5'
23712 3' -60.2 NC_005261.1 + 113029 0.66 0.715468
Target:  5'- cCCACagaGCgGGCC-GCGcGCGGCGugGc -3'
miRNA:   3'- -GGUGcg-CGaCCGGaCGC-CGUCGUugC- -5'
23712 3' -60.2 NC_005261.1 + 29677 0.66 0.715468
Target:  5'- -aACGCGCUGugggcgcuGCCgcacGUGGCGGCcuGCGu -3'
miRNA:   3'- ggUGCGCGAC--------CGGa---CGCCGUCGu-UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.