miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23712 5' -48.7 NC_005261.1 + 83499 0.66 0.998882
Target:  5'- aGCGccaGGCGcg-CGCGccGGugGAAGCGg -3'
miRNA:   3'- aCGCa--CUGCaaaGCGU--UCugUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 18854 0.66 0.998882
Target:  5'- aGCGUGgaGCGUggaUGCAGGGCuu-GCa -3'
miRNA:   3'- aCGCAC--UGCAaa-GCGUUCUGuuuCGc -5'
23712 5' -48.7 NC_005261.1 + 118699 0.66 0.99874
Target:  5'- cGCGcGGCGUgguccugcucagcgUCGCGggcGGGCAcGGCGu -3'
miRNA:   3'- aCGCaCUGCAa-------------AGCGU---UCUGUuUCGC- -5'
23712 5' -48.7 NC_005261.1 + 34372 0.66 0.998638
Target:  5'- cGCGcGGCGccgCGCGcAGACGcGGCGc -3'
miRNA:   3'- aCGCaCUGCaaaGCGU-UCUGUuUCGC- -5'
23712 5' -48.7 NC_005261.1 + 94261 0.66 0.998638
Target:  5'- gGCGcagGGCGgcgcCGCGAGGCucuuGGCGc -3'
miRNA:   3'- aCGCa--CUGCaaa-GCGUUCUGuu--UCGC- -5'
23712 5' -48.7 NC_005261.1 + 113050 0.66 0.998638
Target:  5'- gGCGUGGCGcgccaccgcUCGCuGGGCAucGGCu -3'
miRNA:   3'- aCGCACUGCaa-------AGCGuUCUGUu-UCGc -5'
23712 5' -48.7 NC_005261.1 + 134570 0.66 0.998638
Target:  5'- gGCGccGCGgcugCGCAGGGCGGgccuGGCGa -3'
miRNA:   3'- aCGCacUGCaaa-GCGUUCUGUU----UCGC- -5'
23712 5' -48.7 NC_005261.1 + 31582 0.66 0.998638
Target:  5'- cGCGccgGACGUgagCGCGcucGGcgcGCAGGGCGu -3'
miRNA:   3'- aCGCa--CUGCAaa-GCGU---UC---UGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 71179 0.66 0.99835
Target:  5'- cGCGUccgGGCGcagcUCGCGGGGCGcGGCc -3'
miRNA:   3'- aCGCA---CUGCaa--AGCGUUCUGUuUCGc -5'
23712 5' -48.7 NC_005261.1 + 11465 0.66 0.99835
Target:  5'- aGCGgaGCGgg-CGCGgagGGGCGGGGCGg -3'
miRNA:   3'- aCGCacUGCaaaGCGU---UCUGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 98796 0.66 0.998254
Target:  5'- cGCGUGcgaaACGggUCGCcggcggcgugccggAAGACGGGGgGg -3'
miRNA:   3'- aCGCAC----UGCaaAGCG--------------UUCUGUUUCgC- -5'
23712 5' -48.7 NC_005261.1 + 37233 0.66 0.998013
Target:  5'- uUGCGcGGCGcggCGCGuGGACAgcGCGg -3'
miRNA:   3'- -ACGCaCUGCaaaGCGU-UCUGUuuCGC- -5'
23712 5' -48.7 NC_005261.1 + 93371 0.66 0.997619
Target:  5'- gUGCGccGGCGUga-GCAGGagguuGCAGAGCa -3'
miRNA:   3'- -ACGCa-CUGCAaagCGUUC-----UGUUUCGc -5'
23712 5' -48.7 NC_005261.1 + 74909 0.66 0.997619
Target:  5'- cGCGcUGGCcg--CGCGGGGgAGGGCGa -3'
miRNA:   3'- aCGC-ACUGcaaaGCGUUCUgUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 55172 0.67 0.997163
Target:  5'- cGCc-GGCGgcUCGCGGGGCGGaucGGCGc -3'
miRNA:   3'- aCGcaCUGCaaAGCGUUCUGUU---UCGC- -5'
23712 5' -48.7 NC_005261.1 + 68688 0.67 0.997163
Target:  5'- cGCGUGGgGgccggCGCG-GACGAcGGCGg -3'
miRNA:   3'- aCGCACUgCaaa--GCGUuCUGUU-UCGC- -5'
23712 5' -48.7 NC_005261.1 + 86269 0.67 0.997163
Target:  5'- cGCGUGccgguCGUcgCGCGAGcacagcccGCAGGGCa -3'
miRNA:   3'- aCGCACu----GCAaaGCGUUC--------UGUUUCGc -5'
23712 5' -48.7 NC_005261.1 + 97615 0.67 0.997163
Target:  5'- aGCG-GGCGga--GC-GGGCGGAGCGg -3'
miRNA:   3'- aCGCaCUGCaaagCGuUCUGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 128451 0.67 0.997163
Target:  5'- aGCGcGGCGg-UCGCGAGcACGAcgagcAGCGa -3'
miRNA:   3'- aCGCaCUGCaaAGCGUUC-UGUU-----UCGC- -5'
23712 5' -48.7 NC_005261.1 + 16179 0.67 0.997163
Target:  5'- cGCG-GGCGUg--GCGGGGguGGGCGg -3'
miRNA:   3'- aCGCaCUGCAaagCGUUCUguUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.