miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23712 5' -48.7 NC_005261.1 + 18426 0.67 0.997163
Target:  5'- aGCGcaGACGUccUCGCcGGGCAgcGCGu -3'
miRNA:   3'- aCGCa-CUGCAa-AGCGuUCUGUuuCGC- -5'
23712 5' -48.7 NC_005261.1 + 97588 0.67 0.996636
Target:  5'- cGCG-GGCGga--GC-GGGCGGAGCGg -3'
miRNA:   3'- aCGCaCUGCaaagCGuUCUGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 16548 0.67 0.996636
Target:  5'- cUGCGUGAgGUacgucaggCGCAGGACcuuGCu -3'
miRNA:   3'- -ACGCACUgCAaa------GCGUUCUGuuuCGc -5'
23712 5' -48.7 NC_005261.1 + 127846 0.67 0.996031
Target:  5'- aGCG-GACGgggcggUCGCGgcgccaGGGCAcGAGCGg -3'
miRNA:   3'- aCGCaCUGCaa----AGCGU------UCUGU-UUCGC- -5'
23712 5' -48.7 NC_005261.1 + 128584 0.67 0.99534
Target:  5'- uUGCGcUGGCGgcagaGCAAGAUggaGAGGCa -3'
miRNA:   3'- -ACGC-ACUGCaaag-CGUUCUG---UUUCGc -5'
23712 5' -48.7 NC_005261.1 + 79596 0.67 0.99534
Target:  5'- aGCGcuUGugGUUgagggCGCAGGGCuccacGAGCu -3'
miRNA:   3'- aCGC--ACugCAAa----GCGUUCUGu----UUCGc -5'
23712 5' -48.7 NC_005261.1 + 132667 0.67 0.99534
Target:  5'- cGCGUGugGg--UGCGAGgACAAgaugGGCu -3'
miRNA:   3'- aCGCACugCaaaGCGUUC-UGUU----UCGc -5'
23712 5' -48.7 NC_005261.1 + 80298 0.67 0.994554
Target:  5'- gUGCGUGGCGUUgaagCGCucacgguAGACGc-GCu -3'
miRNA:   3'- -ACGCACUGCAAa---GCGu------UCUGUuuCGc -5'
23712 5' -48.7 NC_005261.1 + 48715 0.67 0.994554
Target:  5'- gGCGUGAUGU--UGCAacGGGCAAucuccAGCa -3'
miRNA:   3'- aCGCACUGCAaaGCGU--UCUGUU-----UCGc -5'
23712 5' -48.7 NC_005261.1 + 84703 0.67 0.994554
Target:  5'- cGCG-GGCa---CGCGAGcACAAAGCGg -3'
miRNA:   3'- aCGCaCUGcaaaGCGUUC-UGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 43100 0.68 0.993664
Target:  5'- cGCGcuacgagGACGUggCGCGGGAUu-GGCGc -3'
miRNA:   3'- aCGCa------CUGCAaaGCGUUCUGuuUCGC- -5'
23712 5' -48.7 NC_005261.1 + 30374 0.68 0.992661
Target:  5'- cGCGccgGGCGccgcggCGCGGGugGAGGUGg -3'
miRNA:   3'- aCGCa--CUGCaaa---GCGUUCugUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 15535 0.68 0.991536
Target:  5'- aGCGgaaGGCGUcgUUCGCGacgcgcGGGCAggAGGCGa -3'
miRNA:   3'- aCGCa--CUGCA--AAGCGU------UCUGU--UUCGC- -5'
23712 5' -48.7 NC_005261.1 + 37801 0.68 0.990278
Target:  5'- gUGCGUGACGa--CGCuGGAgGAccAGCGc -3'
miRNA:   3'- -ACGCACUGCaaaGCGuUCUgUU--UCGC- -5'
23712 5' -48.7 NC_005261.1 + 19092 0.69 0.983727
Target:  5'- uUGCGUGGCGUUggaagUUGCGGGuCAGccggucGGUGg -3'
miRNA:   3'- -ACGCACUGCAA-----AGCGUUCuGUU------UCGC- -5'
23712 5' -48.7 NC_005261.1 + 49783 0.69 0.983727
Target:  5'- cGCG-GACGUcgcgccagCGCGAGACGucGCc -3'
miRNA:   3'- aCGCaCUGCAaa------GCGUUCUGUuuCGc -5'
23712 5' -48.7 NC_005261.1 + 11845 0.69 0.983126
Target:  5'- cGCG-GGCGcgcgUUCGCGAGcgcgagcgucagcuGCGGGGCGa -3'
miRNA:   3'- aCGCaCUGCa---AAGCGUUC--------------UGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 116464 0.69 0.98166
Target:  5'- gUGUGUG-UGUUUUGCcggcgcGGGCGGGGCGg -3'
miRNA:   3'- -ACGCACuGCAAAGCGu-----UCUGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 32039 0.69 0.98166
Target:  5'- cGCGgcucGACGgg-CGCAAGgacauggccgcGCAGAGCGc -3'
miRNA:   3'- aCGCa---CUGCaaaGCGUUC-----------UGUUUCGC- -5'
23712 5' -48.7 NC_005261.1 + 46231 0.7 0.979402
Target:  5'- cGCGUGgacgaGCGcgUCGCAGGcCGcGGCGg -3'
miRNA:   3'- aCGCAC-----UGCaaAGCGUUCuGUuUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.