miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 30756 0.66 0.380076
Target:  5'- aGCC-CGGGCCCuaguccGGGCcggaGCCCGGccGCGg -3'
miRNA:   3'- gCGGcGCCCGGG------CCCG----CGGGUC--UGUu -5'
23713 3' -67.7 NC_005261.1 + 104677 0.66 0.380076
Target:  5'- uGCUGCGGcagcGCCUGGGCcaccGCCCcgaagagcggcuGGACGg -3'
miRNA:   3'- gCGGCGCC----CGGGCCCG----CGGG------------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 95708 0.66 0.380076
Target:  5'- uGCgCGCGGGCUC--GCGCUCGGGCc- -3'
miRNA:   3'- gCG-GCGCCCGGGccCGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 68297 0.66 0.380076
Target:  5'- gGCCGCGGGCgCGGaccucuGCGgCCGcuucGACGu -3'
miRNA:   3'- gCGGCGCCCGgGCC------CGCgGGU----CUGUu -5'
23713 3' -67.7 NC_005261.1 + 48691 0.66 0.380076
Target:  5'- gGcCCGCGGGCCaucacgccggCGGGCGUgauguugcaaCGGGCAAu -3'
miRNA:   3'- gC-GGCGCCCGG----------GCCCGCGg---------GUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 70557 0.66 0.380076
Target:  5'- cCGCCGCaGGGCgCCGcGaagaGCUCGGGCGc -3'
miRNA:   3'- -GCGGCG-CCCG-GGCcCg---CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 12565 0.66 0.379302
Target:  5'- gCGCCgggcaacGCGGGgCCgagagGGGCGCCUAG-CGGa -3'
miRNA:   3'- -GCGG-------CGCCCgGG-----CCCGCGGGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 92795 0.66 0.379302
Target:  5'- gGUCG-GGGUccggucgCCGGGCGCgCGGGCGu -3'
miRNA:   3'- gCGGCgCCCG-------GGCCCGCGgGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 37224 0.66 0.379302
Target:  5'- -cCCGCGGGCUugcgcggCGcGGCGCgUGGACAGc -3'
miRNA:   3'- gcGGCGCCCGG-------GC-CCGCGgGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 119062 0.66 0.378528
Target:  5'- gGCCGCGcgugugcuuucguGGCCCGGGCcacgaaaGCacaGGACGGg -3'
miRNA:   3'- gCGGCGC-------------CCGGGCCCG-------CGgg-UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 61514 0.66 0.372379
Target:  5'- gGCCccgGCGaGGCCCGGGCcuuCUCcGGCAAg -3'
miRNA:   3'- gCGG---CGC-CCGGGCCCGc--GGGuCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 31779 0.66 0.372379
Target:  5'- gCGCCGCGGugcuGCCCGcGGCGCagugcgCCGcGCGc -3'
miRNA:   3'- -GCGGCGCC----CGGGC-CCGCG------GGUcUGUu -5'
23713 3' -67.7 NC_005261.1 + 15498 0.66 0.372379
Target:  5'- uCGCUGCGGGCggggCGugugucGGCGUgCAGGCAGg -3'
miRNA:   3'- -GCGGCGCCCGg---GC------CCGCGgGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 77559 0.66 0.372379
Target:  5'- cCGCCGCcaguGGCgCCGccGCGCCCuGGCAc -3'
miRNA:   3'- -GCGGCGc---CCG-GGCc-CGCGGGuCUGUu -5'
23713 3' -67.7 NC_005261.1 + 56215 0.66 0.372379
Target:  5'- uCGCCGuCGcGGCCCccaaGCGCCacCAGACGGu -3'
miRNA:   3'- -GCGGC-GC-CCGGGcc--CGCGG--GUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 53022 0.66 0.372379
Target:  5'- uCGCCaGCGcuUCCGcGGCGCCgGGGCAGc -3'
miRNA:   3'- -GCGG-CGCccGGGC-CCGCGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 21749 0.66 0.372379
Target:  5'- gGCUGCuGcGCCUGGaGCGCgcgCCGGGCGAg -3'
miRNA:   3'- gCGGCGcC-CGGGCC-CGCG---GGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 97441 0.66 0.372379
Target:  5'- gGgCGCGGGUCUGGGCuucggcggcGCCgGGAUc- -3'
miRNA:   3'- gCgGCGCCCGGGCCCG---------CGGgUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 89194 0.66 0.372379
Target:  5'- cCGCuCGCGGGCgCCGaGGCcgacgcgugGCCC-GACu- -3'
miRNA:   3'- -GCG-GCGCCCG-GGC-CCG---------CGGGuCUGuu -5'
23713 3' -67.7 NC_005261.1 + 53667 0.66 0.372379
Target:  5'- gGCCGCGGGUCgCGGccucgacaGCGagaaaaagccCCCGGGCGc -3'
miRNA:   3'- gCGGCGCCCGG-GCC--------CGC----------GGGUCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.