miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 83341 0.66 0.342665
Target:  5'- cCGCCGCcaccguGGCCCGcaggaaGGCGUCCAcgucGGCGAg -3'
miRNA:   3'- -GCGGCGc-----CCGGGC------CCGCGGGU----CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 65394 0.66 0.34993
Target:  5'- uGCgGCGGG-UUGGGCGgCCCcGGCAGc -3'
miRNA:   3'- gCGgCGCCCgGGCCCGC-GGGuCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 101106 0.66 0.342665
Target:  5'- gGCCGCGcGcGCCUuGGCGCCCucGugGu -3'
miRNA:   3'- gCGGCGC-C-CGGGcCCGCGGGu-CugUu -5'
23713 3' -67.7 NC_005261.1 + 2761 0.66 0.335508
Target:  5'- uCGCgGCGGGCCuCGaGGCccGCCCccgagGGGCu- -3'
miRNA:   3'- -GCGgCGCCCGG-GC-CCG--CGGG-----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 125681 0.66 0.335508
Target:  5'- cCGCCGaauGGGUuugCCGGGCuugGCCCGG-CGAc -3'
miRNA:   3'- -GCGGCg--CCCG---GGCCCG---CGGGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 36649 0.66 0.335508
Target:  5'- gGCgCGCGGGCuuGGGgccagggucgaaCGCUgGGGCGGu -3'
miRNA:   3'- gCG-GCGCCCGggCCC------------GCGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 51880 0.66 0.34993
Target:  5'- gCGCCGCGcGGCagcagCGGcGCgcuacaucGCCCGGGCGc -3'
miRNA:   3'- -GCGGCGC-CCGg----GCC-CG--------CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 70557 0.66 0.380076
Target:  5'- cCGCCGCaGGGCgCCGcGaagaGCUCGGGCGc -3'
miRNA:   3'- -GCGGCG-CCCG-GGCcCg---CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 23152 0.66 0.334799
Target:  5'- gGCCccaaagaGUGGGCCCGgcaGGCGCgCCggGGGCGAc -3'
miRNA:   3'- gCGG-------CGCCCGGGC---CCGCG-GG--UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 92314 0.66 0.342665
Target:  5'- gCGCCGCGcGGUCCGcGCGgCCCAuccGCGGg -3'
miRNA:   3'- -GCGGCGC-CCGGGCcCGC-GGGUc--UGUU- -5'
23713 3' -67.7 NC_005261.1 + 117857 0.66 0.333383
Target:  5'- gCGUCGCguuauucgggGGGaCCCGGgaccggccauguucGCGUCCAGACGGg -3'
miRNA:   3'- -GCGGCG----------CCC-GGGCC--------------CGCGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 2621 0.66 0.34993
Target:  5'- gGCCGcCGGGCggcaUGGG-GCCCAGcACGc -3'
miRNA:   3'- gCGGC-GCCCGg---GCCCgCGGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 30980 0.66 0.345558
Target:  5'- cCGCCGCGGcgcaagcgcaagucgGCCgGGGCcagggGCCCGG-CGc -3'
miRNA:   3'- -GCGGCGCC---------------CGGgCCCG-----CGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 117672 0.66 0.341944
Target:  5'- cCGCCGCgcccggccGGGCCCGcGGCgaggccgGCCCugAGGCc- -3'
miRNA:   3'- -GCGGCG--------CCCGGGC-CCG-------CGGG--UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 24397 0.66 0.335508
Target:  5'- gGCgGCGGGgcgguCCUGGGgGCUCGGAUc- -3'
miRNA:   3'- gCGgCGCCC-----GGGCCCgCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 53558 0.66 0.34993
Target:  5'- gCGCCGC-GGCCCaGGCGCaCUAGc--- -3'
miRNA:   3'- -GCGGCGcCCGGGcCCGCG-GGUCuguu -5'
23713 3' -67.7 NC_005261.1 + 3553 0.66 0.342665
Target:  5'- gCGCgGCGGGCgC-GGCGCCgcuaAGGCGc -3'
miRNA:   3'- -GCGgCGCCCGgGcCCGCGGg---UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 101874 0.66 0.335508
Target:  5'- aCGuCCGCGcGCa-GGGCGCCCAGcCGc -3'
miRNA:   3'- -GC-GGCGCcCGggCCCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 29266 0.66 0.335508
Target:  5'- cCGCCGCuggaGGGCCCGcugcuGaCGCCCuccGGCGAg -3'
miRNA:   3'- -GCGGCG----CCCGGGCc----C-GCGGGu--CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 132615 0.66 0.342665
Target:  5'- aGCCGCcaggGGGCgCuGGCGCCgaGGACGc -3'
miRNA:   3'- gCGGCG----CCCGgGcCCGCGGg-UCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.