miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 60248 0.66 0.34993
Target:  5'- cCGCCGCGgcgggagcggcGGCCgugaaGaGGCGCCCGGGg-- -3'
miRNA:   3'- -GCGGCGC-----------CCGGg----C-CCGCGGGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 2761 0.66 0.335508
Target:  5'- uCGCgGCGGGCCuCGaGGCccGCCCccgagGGGCu- -3'
miRNA:   3'- -GCGgCGCCCGG-GC-CCG--CGGG-----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 30980 0.66 0.345558
Target:  5'- cCGCCGCGGcgcaagcgcaagucgGCCgGGGCcagggGCCCGG-CGc -3'
miRNA:   3'- -GCGGCGCC---------------CGGgCCCG-----CGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 102796 0.66 0.357305
Target:  5'- gGCCGCGaGCgC-GGCGCCCAGcCGc -3'
miRNA:   3'- gCGGCGCcCGgGcCCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 101106 0.66 0.342665
Target:  5'- gGCCGCGcGcGCCUuGGCGCCCucGugGu -3'
miRNA:   3'- gCGGCGC-C-CGGGcCCGCGGGu-CugUu -5'
23713 3' -67.7 NC_005261.1 + 125681 0.66 0.335508
Target:  5'- cCGCCGaauGGGUuugCCGGGCuugGCCCGG-CGAc -3'
miRNA:   3'- -GCGGCg--CCCG---GGCCCG---CGGGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 29424 0.66 0.364035
Target:  5'- gGCCGCgGGGCCCGcGGcCGUguucgugCCGGAgAu -3'
miRNA:   3'- gCGGCG-CCCGGGC-CC-GCG-------GGUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 6442 0.66 0.364788
Target:  5'- gGuCCGgGGGCcggCCGGGCuGCCCGcACAc -3'
miRNA:   3'- gC-GGCgCCCG---GGCCCG-CGGGUcUGUu -5'
23713 3' -67.7 NC_005261.1 + 2621 0.66 0.34993
Target:  5'- gGCCGcCGGGCggcaUGGG-GCCCAGcACGc -3'
miRNA:   3'- gCGGC-GCCCGg---GCCCgCGGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 109766 0.66 0.34993
Target:  5'- cCGCCGCGucGCCgucuCGGGCGuCCCGGcCGc -3'
miRNA:   3'- -GCGGCGCc-CGG----GCCCGC-GGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 101874 0.66 0.335508
Target:  5'- aCGuCCGCGcGCa-GGGCGCCCAGcCGc -3'
miRNA:   3'- -GC-GGCGCcCGggCCCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 117857 0.66 0.333383
Target:  5'- gCGUCGCguuauucgggGGGaCCCGGgaccggccauguucGCGUCCAGACGGg -3'
miRNA:   3'- -GCGGCG----------CCC-GGGCC--------------CGCGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 70557 0.66 0.380076
Target:  5'- cCGCCGCaGGGCgCCGcGaagaGCUCGGGCGc -3'
miRNA:   3'- -GCGGCG-CCCG-GGCcCg---CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 11218 0.66 0.357305
Target:  5'- aCGCCGCGuGGCCCcccgcGGGCGCgCu----- -3'
miRNA:   3'- -GCGGCGC-CCGGG-----CCCGCGgGucuguu -5'
23713 3' -67.7 NC_005261.1 + 88162 0.66 0.34993
Target:  5'- gGCCGCgcagccGGGCCgGGGCGaCgCCGG-CGg -3'
miRNA:   3'- gCGGCG------CCCGGgCCCGC-G-GGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 132615 0.66 0.342665
Target:  5'- aGCCGCcaggGGGCgCuGGCGCCgaGGACGc -3'
miRNA:   3'- gCGGCG----CCCGgGcCCGCGGg-UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 23824 0.66 0.34993
Target:  5'- uGCCccggGCGGGCCggcuagggUGGGCucGCCgGGGCAGg -3'
miRNA:   3'- gCGG----CGCCCGG--------GCCCG--CGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 27722 0.66 0.357305
Target:  5'- uCGCCGCGGGaggagCGGaGaCGCgCGGGCAGa -3'
miRNA:   3'- -GCGGCGCCCgg---GCC-C-GCGgGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 17915 0.66 0.364035
Target:  5'- gCGCCGauuagcagcgaguCGGGCCCGcuGGCGuUCCGGAaCAu -3'
miRNA:   3'- -GCGGC-------------GCCCGGGC--CCGC-GGGUCU-GUu -5'
23713 3' -67.7 NC_005261.1 + 36649 0.66 0.335508
Target:  5'- gGCgCGCGGGCuuGGGgccagggucgaaCGCUgGGGCGGu -3'
miRNA:   3'- gCG-GCGCCCGggCCC------------GCGGgUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.