miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 119062 0.66 0.378528
Target:  5'- gGCCGCGcgugugcuuucguGGCCCGGGCcacgaaaGCacaGGACGGg -3'
miRNA:   3'- gCGGCGC-------------CCGGGCCCG-------CGgg-UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 104677 0.66 0.380076
Target:  5'- uGCUGCGGcagcGCCUGGGCcaccGCCCcgaagagcggcuGGACGg -3'
miRNA:   3'- gCGGCGCC----CGGGCCCG----CGGG------------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 47702 0.66 0.371615
Target:  5'- gCGCCGCGucggcGGCgUCGGGgGCCUccucggcGGACAc -3'
miRNA:   3'- -GCGGCGC-----CCG-GGCCCgCGGG-------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 23824 0.66 0.34993
Target:  5'- uGCCccggGCGGGCCggcuagggUGGGCucGCCgGGGCAGg -3'
miRNA:   3'- gCGG----CGCCCGG--------GCCCG--CGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 18651 0.66 0.364788
Target:  5'- gGCUcccaggucucggGCGGGCCCcagcgggcgaagGGGC-CCCAGGCu- -3'
miRNA:   3'- gCGG------------CGCCCGGG------------CCCGcGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 130586 0.66 0.34993
Target:  5'- cCGCCGCGcGGCCCc-GCGCCUGGcCc- -3'
miRNA:   3'- -GCGGCGC-CCGGGccCGCGGGUCuGuu -5'
23713 3' -67.7 NC_005261.1 + 97791 0.66 0.34993
Target:  5'- aGCCcCGGGCCgGcgaccguccgccGGCGCCCccgcAGACGg -3'
miRNA:   3'- gCGGcGCCCGGgC------------CCGCGGG----UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 29424 0.66 0.364035
Target:  5'- gGCCGCgGGGCCCGcGGcCGUguucgugCCGGAgAu -3'
miRNA:   3'- gCGGCG-CCCGGGC-CC-GCG-------GGUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 91488 0.66 0.357305
Target:  5'- cCGCCGCGGccgccGCCCGccccgcGCGCCUgcuggucucGGACAu -3'
miRNA:   3'- -GCGGCGCC-----CGGGCc-----CGCGGG---------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 24397 0.66 0.335508
Target:  5'- gGCgGCGGGgcgguCCUGGGgGCUCGGAUc- -3'
miRNA:   3'- gCGgCGCCC-----GGGCCCgCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 117857 0.66 0.333383
Target:  5'- gCGUCGCguuauucgggGGGaCCCGGgaccggccauguucGCGUCCAGACGGg -3'
miRNA:   3'- -GCGGCG----------CCC-GGGCC--------------CGCGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 30980 0.66 0.345558
Target:  5'- cCGCCGCGGcgcaagcgcaagucgGCCgGGGCcagggGCCCGG-CGc -3'
miRNA:   3'- -GCGGCGCC---------------CGGgCCCG-----CGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 89194 0.66 0.372379
Target:  5'- cCGCuCGCGGGCgCCGaGGCcgacgcgugGCCC-GACu- -3'
miRNA:   3'- -GCG-GCGCCCG-GGC-CCG---------CGGGuCUGuu -5'
23713 3' -67.7 NC_005261.1 + 70557 0.66 0.380076
Target:  5'- cCGCCGCaGGGCgCCGcGaagaGCUCGGGCGc -3'
miRNA:   3'- -GCGGCG-CCCG-GGCcCg---CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 36649 0.66 0.335508
Target:  5'- gGCgCGCGGGCuuGGGgccagggucgaaCGCUgGGGCGGu -3'
miRNA:   3'- gCG-GCGCCCGggCCC------------GCGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 31734 0.66 0.34993
Target:  5'- gGCCGCGcgauGGCCCGGcCG-UCGGGCAGg -3'
miRNA:   3'- gCGGCGC----CCGGGCCcGCgGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 2761 0.66 0.335508
Target:  5'- uCGCgGCGGGCCuCGaGGCccGCCCccgagGGGCu- -3'
miRNA:   3'- -GCGgCGCCCGG-GC-CCG--CGGG-----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 6442 0.66 0.364788
Target:  5'- gGuCCGgGGGCcggCCGGGCuGCCCGcACAc -3'
miRNA:   3'- gC-GGCgCCCG---GGCCCG-CGGGUcUGUu -5'
23713 3' -67.7 NC_005261.1 + 92795 0.66 0.379302
Target:  5'- gGUCG-GGGUccggucgCCGGGCGCgCGGGCGu -3'
miRNA:   3'- gCGGCgCCCG-------GGCCCGCGgGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 3553 0.66 0.342665
Target:  5'- gCGCgGCGGGCgC-GGCGCCgcuaAGGCGc -3'
miRNA:   3'- -GCGgCGCCCGgGcCCGCGGg---UCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.