miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 102796 0.66 0.357305
Target:  5'- gGCCGCGaGCgC-GGCGCCCAGcCGc -3'
miRNA:   3'- gCGGCGCcCGgGcCCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 65394 0.66 0.34993
Target:  5'- uGCgGCGGG-UUGGGCGgCCCcGGCAGc -3'
miRNA:   3'- gCGgCGCCCgGGCCCGC-GGGuCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 97791 0.66 0.34993
Target:  5'- aGCCcCGGGCCgGcgaccguccgccGGCGCCCccgcAGACGg -3'
miRNA:   3'- gCGGcGCCCGGgC------------CCGCGGG----UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 4531 0.67 0.314699
Target:  5'- gCGCCGCggcgaGGGCgCCGGGCccugGCCUuGGCu- -3'
miRNA:   3'- -GCGGCG-----CCCG-GGCCCG----CGGGuCUGuu -5'
23713 3' -67.7 NC_005261.1 + 19877 0.67 0.307983
Target:  5'- cCGCCgGCGGGCCCGucgucGC-CCCAGuCGc -3'
miRNA:   3'- -GCGG-CGCCCGGGCc----CGcGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 32142 0.67 0.307983
Target:  5'- cCGCUGgGGGCUCGGcGCGCCgCugcGGCc- -3'
miRNA:   3'- -GCGGCgCCCGGGCC-CGCGG-Gu--CUGuu -5'
23713 3' -67.7 NC_005261.1 + 33827 0.67 0.307983
Target:  5'- gGCCGgGGGgCgCGGGCcCCCuGGCGc -3'
miRNA:   3'- gCGGCgCCCgG-GCCCGcGGGuCUGUu -5'
23713 3' -67.7 NC_005261.1 + 35708 0.67 0.288493
Target:  5'- gGCCGgGGGCUCGguGGCGgcCCCGGcCGAg -3'
miRNA:   3'- gCGGCgCCCGGGC--CCGC--GGGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 2805 0.67 0.314699
Target:  5'- gGCCGggaGGGgCCGGGCGgCCCcagcccgagcucGGGCGg -3'
miRNA:   3'- gCGGCg--CCCgGGCCCGC-GGG------------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 4485 0.67 0.288493
Target:  5'- gCGCCGCGGcguagccuGCgCGGGC-CCCAGuCGc -3'
miRNA:   3'- -GCGGCGCC--------CGgGCCCGcGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 98684 0.67 0.307983
Target:  5'- cCGCCG-GGGCCgGaGGCGCggCCGGAg-- -3'
miRNA:   3'- -GCGGCgCCCGGgC-CCGCG--GGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 43411 0.67 0.310656
Target:  5'- gCGCCGgGGGCggccuccgccgCCGgcggggagcuggcucGGCGCCUGGACGu -3'
miRNA:   3'- -GCGGCgCCCG-----------GGC---------------CCGCGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 16054 0.67 0.314699
Target:  5'- gGCaGCGGGCCCGcgccgagccGGCGCgUguAGACGAa -3'
miRNA:   3'- gCGgCGCCCGGGC---------CCGCGgG--UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 76174 0.67 0.307983
Target:  5'- gCGCUGCaguacgagcgGGGCCUGGGCGUgCuGAUg- -3'
miRNA:   3'- -GCGGCG----------CCCGGGCCCGCGgGuCUGuu -5'
23713 3' -67.7 NC_005261.1 + 64675 0.67 0.307983
Target:  5'- uCGCCGUGGuGCggcaCCGGGCGCgucCCGGGg-- -3'
miRNA:   3'- -GCGGCGCC-CG----GGCCCGCG---GGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 54367 0.67 0.314022
Target:  5'- gGuCCGCGGGCagcggcuCgGGGCGCCCgcgaAGGCc- -3'
miRNA:   3'- gC-GGCGCCCG-------GgCCCGCGGG----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 94861 0.67 0.314699
Target:  5'- gCGCuCGCGcacGGCCCGGGCgggcgGCCCGcguGCAGc -3'
miRNA:   3'- -GCG-GCGC---CCGGGCCCG-----CGGGUc--UGUU- -5'
23713 3' -67.7 NC_005261.1 + 57842 0.67 0.307983
Target:  5'- -uCCGCGGGCgCGGGCGgCaAGGCc- -3'
miRNA:   3'- gcGGCGCCCGgGCCCGCgGgUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 97089 0.67 0.307983
Target:  5'- gCGCCGgcUGGGCCgGgGGCGCcagCCGGGCc- -3'
miRNA:   3'- -GCGGC--GCCCGGgC-CCGCG---GGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 116478 0.67 0.307983
Target:  5'- cCGgCGCGGGCggggCGGGCGCgCGGuAUAAa -3'
miRNA:   3'- -GCgGCGCCCGg---GCCCGCGgGUC-UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.