Results 21 - 40 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 97313 | 0.74 | 0.107302 |
Target: 5'- cCGuCCGCGGGgCCGGG-GCCCgauaGGGCAAa -3' miRNA: 3'- -GC-GGCGCCCgGGCCCgCGGG----UCUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 71068 | 0.74 | 0.104683 |
Target: 5'- cCGCCGCGcGGCgggCgGGGCGUCCGGGCc- -3' miRNA: 3'- -GCGGCGC-CCG---GgCCCGCGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 11906 | 0.74 | 0.104683 |
Target: 5'- cCGCCGCGGGCCCGGccCGgCCGG-CGg -3' miRNA: 3'- -GCGGCGCCCGGGCCc-GCgGGUCuGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 49087 | 0.74 | 0.102125 |
Target: 5'- gCGCCGCGGGCCCGcugagcGCGCgCAG-CAGc -3' miRNA: 3'- -GCGGCGCCCGGGCc-----CGCGgGUCuGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 102948 | 0.74 | 0.097183 |
Target: 5'- cCGCUGCGgcggcGGCCgCGGGCGCCgCGGGCu- -3' miRNA: 3'- -GCGGCGC-----CCGG-GCCCGCGG-GUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 8807 | 0.73 | 0.127423 |
Target: 5'- cCGCCGaGGGCUUgaagGGGCGCCCgccGGGCAAg -3' miRNA: 3'- -GCGGCgCCCGGG----CCCGCGGG---UCUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 32325 | 0.73 | 0.127423 |
Target: 5'- gGCCGCGGcGCCCGGcGUGgCCugGGACGc -3' miRNA: 3'- gCGGCGCC-CGGGCC-CGCgGG--UCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 2942 | 0.73 | 0.127423 |
Target: 5'- cCGCCGCGG--CCGGGCuccgGCCCGGACu- -3' miRNA: 3'- -GCGGCGCCcgGGCCCG----CGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 1935 | 0.73 | 0.127423 |
Target: 5'- gCGCCGCGGGCagcaCCGcGGCGCgCAGGu-- -3' miRNA: 3'- -GCGGCGCCCG----GGC-CCGCGgGUCUguu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 63017 | 0.73 | 0.124349 |
Target: 5'- gCGCCcgcGCGGGCgCC-GGCGCCCGcGGCGAg -3' miRNA: 3'- -GCGG---CGCCCG-GGcCCGCGGGU-CUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 4969 | 0.73 | 0.124349 |
Target: 5'- gGCCGCggcguccucugGGGCCCggaGGGCGCCgAGGCc- -3' miRNA: 3'- gCGGCG-----------CCCGGG---CCCGCGGgUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 28758 | 0.73 | 0.121343 |
Target: 5'- aCGCCGC-GGCCgGgGGCGCCUGGGCc- -3' miRNA: 3'- -GCGGCGcCCGGgC-CCGCGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 98581 | 0.73 | 0.118404 |
Target: 5'- -uCCGCGGGCUCGGGCGagUAGGCGg -3' miRNA: 3'- gcGGCGCCCGGGCCCGCggGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 113306 | 0.73 | 0.118404 |
Target: 5'- uGCCGCGGGCCUGG--GCCCGGcugcGCGAg -3' miRNA: 3'- gCGGCGCCCGGGCCcgCGGGUC----UGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 70815 | 0.73 | 0.115532 |
Target: 5'- gCGCCgGCGGcCCCGGGCGCgCCGGcGCGc -3' miRNA: 3'- -GCGG-CGCCcGGGCCCGCG-GGUC-UGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 89090 | 0.73 | 0.115532 |
Target: 5'- gGCUGC-GGCCCGGGCGCgCuGGCGc -3' miRNA: 3'- gCGGCGcCCGGGCCCGCGgGuCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 127894 | 0.72 | 0.133785 |
Target: 5'- gCGcCCGuCGGGCCCGGGCcugggcuuggGCUCGGGCc- -3' miRNA: 3'- -GC-GGC-GCCCGGGCCCG----------CGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 3426 | 0.72 | 0.133785 |
Target: 5'- aGCgCGCGGGCCagcguccaggCGGGCGCgCGGGCc- -3' miRNA: 3'- gCG-GCGCCCGG----------GCCCGCGgGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 128784 | 0.72 | 0.130569 |
Target: 5'- gCGCCGUu-GUCUGGGCGCCCGGGCc- -3' miRNA: 3'- -GCGGCGccCGGGCCCGCGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 124440 | 0.72 | 0.133785 |
Target: 5'- gCGCCGCcacaccagccGGGgCCGGGUGCCCucagGGGCGc -3' miRNA: 3'- -GCGGCG----------CCCgGGCCCGCGGG----UCUGUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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