Results 41 - 60 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 102541 | 0.72 | 0.143878 |
Target: 5'- cCGCCuGCGGcCCCaGGCGCCCggcGGACAc -3' miRNA: 3'- -GCGG-CGCCcGGGcCCGCGGG---UCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 74518 | 0.72 | 0.147394 |
Target: 5'- gCGCCG-GGGCCauggcgcuUGGGCGCCUAGAg-- -3' miRNA: 3'- -GCGGCgCCCGG--------GCCCGCGGGUCUguu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 118294 | 0.72 | 0.147394 |
Target: 5'- cCGCCGCGGGCaCCgGGGCGCaCUuccGCAc -3' miRNA: 3'- -GCGGCGCCCG-GG-CCCGCG-GGuc-UGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 51425 | 0.72 | 0.147394 |
Target: 5'- cCGCCuGCuGGGcCCCGGGCGCgCCGuGAUGAu -3' miRNA: 3'- -GCGG-CG-CCC-GGGCCCGCG-GGU-CUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 80103 | 0.72 | 0.137075 |
Target: 5'- gCGCCGCGGuaccgGCuuGGGCGCCgCGG-CAGc -3' miRNA: 3'- -GCGGCGCC-----CGggCCCGCGG-GUCuGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 52966 | 0.72 | 0.136743 |
Target: 5'- gCGCCGCGccggugcGGCgCCGgcaggcgggggcGGCGCCCAGGCGu -3' miRNA: 3'- -GCGGCGC-------CCG-GGC------------CCGCGGGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 90060 | 0.72 | 0.130569 |
Target: 5'- aGCCaGCGGcGCCCcgcGGGCGCCgaGGGCAGc -3' miRNA: 3'- gCGG-CGCC-CGGG---CCCGCGGg-UCUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 128784 | 0.72 | 0.130569 |
Target: 5'- gCGCCGUu-GUCUGGGCGCCCGGGCc- -3' miRNA: 3'- -GCGGCGccCGGGCCCGCGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 3426 | 0.72 | 0.133785 |
Target: 5'- aGCgCGCGGGCCagcguccaggCGGGCGCgCGGGCc- -3' miRNA: 3'- gCG-GCGCCCGG----------GCCCGCGgGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 127894 | 0.72 | 0.133785 |
Target: 5'- gCGcCCGuCGGGCCCGGGCcugggcuuggGCUCGGGCc- -3' miRNA: 3'- -GC-GGC-GCCCGGGCCCG----------CGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 124440 | 0.72 | 0.133785 |
Target: 5'- gCGCCGCcacaccagccGGGgCCGGGUGCCCucagGGGCGc -3' miRNA: 3'- -GCGGCG----------CCCgGGCCCGCGGG----UCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 13666 | 0.72 | 0.133785 |
Target: 5'- cCGCCGCgggggGGGCgCgGGGCGCgCGGGCGu -3' miRNA: 3'- -GCGGCG-----CCCG-GgCCCGCGgGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 48847 | 0.72 | 0.133785 |
Target: 5'- cCGCCGCGcagcaGGCCCa-GCGCCCGGGCc- -3' miRNA: 3'- -GCGGCGC-----CCGGGccCGCGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 98198 | 0.72 | 0.135092 |
Target: 5'- gCGCgGCGGGCagCGGGCGCCgccacggcagcgcggCGGGCAu -3' miRNA: 3'- -GCGgCGCCCGg-GCCCGCGG---------------GUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 1365 | 0.71 | 0.162252 |
Target: 5'- -cCCGCGGGCCCuGGuccGCGuCCCAGGCc- -3' miRNA: 3'- gcGGCGCCCGGG-CC---CGC-GGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 2549 | 0.71 | 0.162252 |
Target: 5'- gCGCCGCggcgcuGGGCgCGGGCGugugguacucCCCGGGCGg -3' miRNA: 3'- -GCGGCG------CCCGgGCCCGC----------GGGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 70670 | 0.71 | 0.162252 |
Target: 5'- gGCCGCGGGCcgcaccuccagCCaGGCGUCCAGcGCGg -3' miRNA: 3'- gCGGCGCCCG-----------GGcCCGCGGGUC-UGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 16262 | 0.71 | 0.162252 |
Target: 5'- gGCCGcCGGGgCCGGGCuucggcucGCCCGGGgGg -3' miRNA: 3'- gCGGC-GCCCgGGCCCG--------CGGGUCUgUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 11945 | 0.71 | 0.162252 |
Target: 5'- gCGCCGCGGcggcucGCCCGGcGCGCgcuCCAGcGCAGc -3' miRNA: 3'- -GCGGCGCC------CGGGCC-CGCG---GGUC-UGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 105753 | 0.71 | 0.166172 |
Target: 5'- uCGCgCGCGGGgaCCUGGGUGCUCAGGg-- -3' miRNA: 3'- -GCG-GCGCCC--GGGCCCGCGGGUCUguu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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