Results 1 - 20 of 309 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 3827 | 0.87 | 0.010188 |
Target: 5'- uGCCGCGGGCCCGGGCGCUgGcGGCAGc -3' miRNA: 3'- gCGGCGCCCGGGCCCGCGGgU-CUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 71611 | 0.82 | 0.025908 |
Target: 5'- cCGCCGC-GGCCCGGGCgcggGCCCGGGCGg -3' miRNA: 3'- -GCGGCGcCCGGGCCCG----CGGGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 97405 | 0.8 | 0.033519 |
Target: 5'- uGCCGCGGGCUuggCGGGCGCgCCGGGCc- -3' miRNA: 3'- gCGGCGCCCGG---GCCCGCG-GGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 65803 | 0.8 | 0.034392 |
Target: 5'- -uCCGCGGGUCgGGGUGCCCGGGCGg -3' miRNA: 3'- gcGGCGCCCGGgCCCGCGGGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 53582 | 0.79 | 0.040115 |
Target: 5'- gGCCGCGGGCCgGcGGCGCCCcagcGGACc- -3' miRNA: 3'- gCGGCGCCCGGgC-CCGCGGG----UCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 44295 | 0.78 | 0.04884 |
Target: 5'- aGCgGCGGGCCagggccgcugcccgCGGGCGCCgCAGACGGg -3' miRNA: 3'- gCGgCGCCCGG--------------GCCCGCGG-GUCUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 15923 | 0.78 | 0.05449 |
Target: 5'- aGCCG-GGGCCgGGGCcgggGCCCGGGCAGg -3' miRNA: 3'- gCGGCgCCCGGgCCCG----CGGGUCUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 78054 | 0.77 | 0.06016 |
Target: 5'- gGUCGCGGGCCCGGcccccgcGCcgGCCCAGGCGc -3' miRNA: 3'- gCGGCGCCCGGGCC-------CG--CGGGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 79232 | 0.76 | 0.068442 |
Target: 5'- aG-CGCGGcGCCCGcGGCGCCCAGcACAAc -3' miRNA: 3'- gCgGCGCC-CGGGC-CCGCGGGUC-UGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 12300 | 0.76 | 0.07019 |
Target: 5'- cCGCCGCGGGCaCGGGCGCgUAGcCGg -3' miRNA: 3'- -GCGGCGCCCGgGCCCGCGgGUCuGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 35929 | 0.76 | 0.075695 |
Target: 5'- gCGCCGCa-GCCCagcGGGCGCCCAGGCc- -3' miRNA: 3'- -GCGGCGccCGGG---CCCGCGGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 43796 | 0.76 | 0.075695 |
Target: 5'- gCGCCGCGGGUgaGGGgGCgCCGGGCGc -3' miRNA: 3'- -GCGGCGCCCGggCCCgCG-GGUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 10254 | 0.76 | 0.07762 |
Target: 5'- cCGCCGCGGGCCUGGcGCcuucuGCCCuGAgGAc -3' miRNA: 3'- -GCGGCGCCCGGGCC-CG-----CGGGuCUgUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 34353 | 0.76 | 0.078404 |
Target: 5'- gGCCGaCGGGgCCGGGCGCCgcgcggcgccgcgcgCAGACGc -3' miRNA: 3'- gCGGC-GCCCgGGCCCGCGG---------------GUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 38915 | 0.75 | 0.085801 |
Target: 5'- gGCgCGCGGGCCCGcgcgccaagccGGCGgCCGGGCGGg -3' miRNA: 3'- gCG-GCGCCCGGGC-----------CCGCgGGUCUGUU- -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 129615 | 0.75 | 0.087971 |
Target: 5'- uCGCgGCGGGgUCGGGCGCCuuugCAGGCGg -3' miRNA: 3'- -GCGgCGCCCgGGCCCGCGG----GUCUGUu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 16297 | 0.75 | 0.092468 |
Target: 5'- gCGCCGuCGGGCCCaGcGGCGgCCGGGCc- -3' miRNA: 3'- -GCGGC-GCCCGGG-C-CCGCgGGUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 3343 | 0.75 | 0.092468 |
Target: 5'- gCGCCGCGGcGCCCGGcGCGCCggccuucaGGGCc- -3' miRNA: 3'- -GCGGCGCC-CGGGCC-CGCGGg-------UCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 102948 | 0.74 | 0.097183 |
Target: 5'- cCGCUGCGgcggcGGCCgCGGGCGCCgCGGGCu- -3' miRNA: 3'- -GCGGCGC-----CCGG-GCCCGCGG-GUCUGuu -5' |
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23713 | 3' | -67.7 | NC_005261.1 | + | 49087 | 0.74 | 0.102125 |
Target: 5'- gCGCCGCGGGCCCGcugagcGCGCgCAG-CAGc -3' miRNA: 3'- -GCGGCGCCCGGGCc-----CGCGgGUCuGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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