miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 71068 0.74 0.104683
Target:  5'- cCGCCGCGcGGCgggCgGGGCGUCCGGGCc- -3'
miRNA:   3'- -GCGGCGC-CCG---GgCCCGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 11906 0.74 0.104683
Target:  5'- cCGCCGCGGGCCCGGccCGgCCGG-CGg -3'
miRNA:   3'- -GCGGCGCCCGGGCCc-GCgGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 97313 0.74 0.107302
Target:  5'- cCGuCCGCGGGgCCGGG-GCCCgauaGGGCAAa -3'
miRNA:   3'- -GC-GGCGCCCgGGCCCgCGGG----UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 29863 0.74 0.109172
Target:  5'- gGCCGCGcGGCgCCGGcgccgcugccgccaGCGCCCGGGCc- -3'
miRNA:   3'- gCGGCGC-CCG-GGCC--------------CGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 72430 0.74 0.109712
Target:  5'- uCGCCGCGcuuGCCCccggcggGGGCGCCCGcGGCGAg -3'
miRNA:   3'- -GCGGCGCc--CGGG-------CCCGCGGGU-CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 70815 0.73 0.115532
Target:  5'- gCGCCgGCGGcCCCGGGCGCgCCGGcGCGc -3'
miRNA:   3'- -GCGG-CGCCcGGGCCCGCG-GGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 89090 0.73 0.115532
Target:  5'- gGCUGC-GGCCCGGGCGCgCuGGCGc -3'
miRNA:   3'- gCGGCGcCCGGGCCCGCGgGuCUGUu -5'
23713 3' -67.7 NC_005261.1 + 113306 0.73 0.118404
Target:  5'- uGCCGCGGGCCUGG--GCCCGGcugcGCGAg -3'
miRNA:   3'- gCGGCGCCCGGGCCcgCGGGUC----UGUU- -5'
23713 3' -67.7 NC_005261.1 + 98581 0.73 0.118404
Target:  5'- -uCCGCGGGCUCGGGCGagUAGGCGg -3'
miRNA:   3'- gcGGCGCCCGGGCCCGCggGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 28758 0.73 0.121343
Target:  5'- aCGCCGC-GGCCgGgGGCGCCUGGGCc- -3'
miRNA:   3'- -GCGGCGcCCGGgC-CCGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 63017 0.73 0.124349
Target:  5'- gCGCCcgcGCGGGCgCC-GGCGCCCGcGGCGAg -3'
miRNA:   3'- -GCGG---CGCCCG-GGcCCGCGGGU-CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 4969 0.73 0.124349
Target:  5'- gGCCGCggcguccucugGGGCCCggaGGGCGCCgAGGCc- -3'
miRNA:   3'- gCGGCG-----------CCCGGG---CCCGCGGgUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 1935 0.73 0.127423
Target:  5'- gCGCCGCGGGCagcaCCGcGGCGCgCAGGu-- -3'
miRNA:   3'- -GCGGCGCCCG----GGC-CCGCGgGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 2942 0.73 0.127423
Target:  5'- cCGCCGCGG--CCGGGCuccgGCCCGGACu- -3'
miRNA:   3'- -GCGGCGCCcgGGCCCG----CGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 32325 0.73 0.127423
Target:  5'- gGCCGCGGcGCCCGGcGUGgCCugGGACGc -3'
miRNA:   3'- gCGGCGCC-CGGGCC-CGCgGG--UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 8807 0.73 0.127423
Target:  5'- cCGCCGaGGGCUUgaagGGGCGCCCgccGGGCAAg -3'
miRNA:   3'- -GCGGCgCCCGGG----CCCGCGGG---UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 128784 0.72 0.130569
Target:  5'- gCGCCGUu-GUCUGGGCGCCCGGGCc- -3'
miRNA:   3'- -GCGGCGccCGGGCCCGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 90060 0.72 0.130569
Target:  5'- aGCCaGCGGcGCCCcgcGGGCGCCgaGGGCAGc -3'
miRNA:   3'- gCGG-CGCC-CGGG---CCCGCGGg-UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 127894 0.72 0.133785
Target:  5'- gCGcCCGuCGGGCCCGGGCcugggcuuggGCUCGGGCc- -3'
miRNA:   3'- -GC-GGC-GCCCGGGCCCG----------CGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 124440 0.72 0.133785
Target:  5'- gCGCCGCcacaccagccGGGgCCGGGUGCCCucagGGGCGc -3'
miRNA:   3'- -GCGGCG----------CCCgGGCCCGCGGG----UCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.