miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 124440 0.72 0.133785
Target:  5'- gCGCCGCcacaccagccGGGgCCGGGUGCCCucagGGGCGc -3'
miRNA:   3'- -GCGGCG----------CCCgGGCCCGCGGG----UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 127894 0.72 0.133785
Target:  5'- gCGcCCGuCGGGCCCGGGCcugggcuuggGCUCGGGCc- -3'
miRNA:   3'- -GC-GGC-GCCCGGGCCCG----------CGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 3426 0.72 0.133785
Target:  5'- aGCgCGCGGGCCagcguccaggCGGGCGCgCGGGCc- -3'
miRNA:   3'- gCG-GCGCCCGG----------GCCCGCGgGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 98198 0.72 0.135092
Target:  5'- gCGCgGCGGGCagCGGGCGCCgccacggcagcgcggCGGGCAu -3'
miRNA:   3'- -GCGgCGCCCGg-GCCCGCGG---------------GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 52966 0.72 0.136743
Target:  5'- gCGCCGCGccggugcGGCgCCGgcaggcgggggcGGCGCCCAGGCGu -3'
miRNA:   3'- -GCGGCGC-------CCG-GGC------------CCGCGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 121191 0.72 0.137075
Target:  5'- gGCCGgggcCGGGCCCGGG-GCCgCGGGCc- -3'
miRNA:   3'- gCGGC----GCCCGGGCCCgCGG-GUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 80103 0.72 0.137075
Target:  5'- gCGCCGCGGuaccgGCuuGGGCGCCgCGG-CAGc -3'
miRNA:   3'- -GCGGCGCC-----CGggCCCGCGG-GUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 107366 0.72 0.140439
Target:  5'- uCGUCGUGGGCgCCgGGGCGCCCGcguccACGAa -3'
miRNA:   3'- -GCGGCGCCCG-GG-CCCGCGGGUc----UGUU- -5'
23713 3' -67.7 NC_005261.1 + 31557 0.72 0.143878
Target:  5'- aCGCC-UGGGCCggguccuggaCGGGCGCgCCGGACGu -3'
miRNA:   3'- -GCGGcGCCCGG----------GCCCGCG-GGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 71432 0.72 0.143878
Target:  5'- gGCC-CGGGCCCGcGGCGCgCAGcCGc -3'
miRNA:   3'- gCGGcGCCCGGGC-CCGCGgGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 102541 0.72 0.143878
Target:  5'- cCGCCuGCGGcCCCaGGCGCCCggcGGACAc -3'
miRNA:   3'- -GCGG-CGCCcGGGcCCGCGGG---UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 51425 0.72 0.147394
Target:  5'- cCGCCuGCuGGGcCCCGGGCGCgCCGuGAUGAu -3'
miRNA:   3'- -GCGG-CG-CCC-GGGCCCGCG-GGU-CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 118294 0.72 0.147394
Target:  5'- cCGCCGCGGGCaCCgGGGCGCaCUuccGCAc -3'
miRNA:   3'- -GCGGCGCCCG-GG-CCCGCG-GGuc-UGUu -5'
23713 3' -67.7 NC_005261.1 + 74518 0.72 0.147394
Target:  5'- gCGCCG-GGGCCauggcgcuUGGGCGCCUAGAg-- -3'
miRNA:   3'- -GCGGCgCCCGG--------GCCCGCGGGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 108748 0.71 0.158415
Target:  5'- gCGCCGCGGcGUCCGcGGCGCgCCGcgccacGGCAc -3'
miRNA:   3'- -GCGGCGCC-CGGGC-CCGCG-GGU------CUGUu -5'
23713 3' -67.7 NC_005261.1 + 11945 0.71 0.162252
Target:  5'- gCGCCGCGGcggcucGCCCGGcGCGCgcuCCAGcGCAGc -3'
miRNA:   3'- -GCGGCGCC------CGGGCC-CGCG---GGUC-UGUU- -5'
23713 3' -67.7 NC_005261.1 + 16262 0.71 0.162252
Target:  5'- gGCCGcCGGGgCCGGGCuucggcucGCCCGGGgGg -3'
miRNA:   3'- gCGGC-GCCCgGGCCCG--------CGGGUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 70670 0.71 0.162252
Target:  5'- gGCCGCGGGCcgcaccuccagCCaGGCGUCCAGcGCGg -3'
miRNA:   3'- gCGGCGCCCG-----------GGcCCGCGGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 2549 0.71 0.162252
Target:  5'- gCGCCGCggcgcuGGGCgCGGGCGugugguacucCCCGGGCGg -3'
miRNA:   3'- -GCGGCG------CCCGgGCCCGC----------GGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 1365 0.71 0.162252
Target:  5'- -cCCGCGGGCCCuGGuccGCGuCCCAGGCc- -3'
miRNA:   3'- gcGGCGCCCGGG-CC---CGC-GGGUCUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.