miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 50010 0.71 0.166172
Target:  5'- gCGCCGCcagcGCgCGGGCGCCCAGcCGc -3'
miRNA:   3'- -GCGGCGcc--CGgGCCCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 105753 0.71 0.166172
Target:  5'- uCGCgCGCGGGgaCCUGGGUGCUCAGGg-- -3'
miRNA:   3'- -GCG-GCGCCC--GGGCCCGCGGGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 29194 0.71 0.167763
Target:  5'- uCGCCGCGGcGCCCGcgcgggcgcgcgacuGGgGCCCGcGCAGg -3'
miRNA:   3'- -GCGGCGCC-CGGGC---------------CCgCGGGUcUGUU- -5'
23713 3' -67.7 NC_005261.1 + 103042 0.71 0.167763
Target:  5'- gGCCGCaGGGCCCaGcgccugucccggcacGGCGCCCAG-CAc -3'
miRNA:   3'- gCGGCG-CCCGGG-C---------------CCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 118190 0.71 0.169772
Target:  5'- gGCCGCGGGCCCc-GCGCCUgccgcgcugcgcgGGGCGc -3'
miRNA:   3'- gCGGCGCCCGGGccCGCGGG-------------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 4926 0.71 0.170176
Target:  5'- cCGCCGCGGccgcgagcGCCCGcGCcgcgGCCCAGGCGc -3'
miRNA:   3'- -GCGGCGCC--------CGGGCcCG----CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 12724 0.71 0.170176
Target:  5'- gGCgCGCGGGCCCGccGGCcCCCuGGGCGGg -3'
miRNA:   3'- gCG-GCGCCCGGGC--CCGcGGG-UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 93921 0.71 0.170176
Target:  5'- gCGcCCGCGGGCUugcgccguccgCGGGCGCcgccuCCGGGCGGu -3'
miRNA:   3'- -GC-GGCGCCCGG-----------GCCCGCG-----GGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 38354 0.71 0.174267
Target:  5'- aCGCCcaGCGGGCCUuugGGGCGgCCGGGa-- -3'
miRNA:   3'- -GCGG--CGCCCGGG---CCCGCgGGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 44885 0.71 0.174267
Target:  5'- gCGCCGCGgggauGGCCgGGGCGUacaCGGACc- -3'
miRNA:   3'- -GCGGCGC-----CCGGgCCCGCGg--GUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 118633 0.71 0.178445
Target:  5'- cCGCCGCGGcggcGCuCUGGGC-CCCGGGCc- -3'
miRNA:   3'- -GCGGCGCC----CG-GGCCCGcGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 33751 0.71 0.178445
Target:  5'- gCGCCGgggcCGGGCCCGcucgcGGgGCCCGcGGCGAg -3'
miRNA:   3'- -GCGGC----GCCCGGGC-----CCgCGGGU-CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 111773 0.71 0.178445
Target:  5'- gCGCUGCGcGCCCGGGgugUGCCCcuGGACGc -3'
miRNA:   3'- -GCGGCGCcCGGGCCC---GCGGG--UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 20120 0.7 0.182712
Target:  5'- gGCgCGCGGGCCCGcagcggcuccgcGaGCGCUCAGGCc- -3'
miRNA:   3'- gCG-GCGCCCGGGC------------C-CGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 68728 0.7 0.187069
Target:  5'- aCGCgGCGGGCgCCGGcgggaagaaGCGCCCgccgGGGCGc -3'
miRNA:   3'- -GCGgCGCCCG-GGCC---------CGCGGG----UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 105953 0.7 0.191517
Target:  5'- gCGCCGuCGauGGCCUcGGCGCCCAGcGCGg -3'
miRNA:   3'- -GCGGC-GC--CCGGGcCCGCGGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 107261 0.7 0.191517
Target:  5'- gGCgCGCGGGCacgggCGGGCGCgcaUCAGGCGg -3'
miRNA:   3'- gCG-GCGCCCGg----GCCCGCG---GGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 125295 0.7 0.191517
Target:  5'- gGCCGCGGGCgCCggacccgcGGGCGCuCCGcGGCc- -3'
miRNA:   3'- gCGGCGCCCG-GG--------CCCGCG-GGU-CUGuu -5'
23713 3' -67.7 NC_005261.1 + 53715 0.7 0.191517
Target:  5'- gCGCCGCGGccaGCUgCGGcGCGCCCgcacGGGCGAg -3'
miRNA:   3'- -GCGGCGCC---CGG-GCC-CGCGGG----UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 53893 0.7 0.191517
Target:  5'- uCGaaGCGGGCCCGcuucgcgagcGGCGCCC-GACu- -3'
miRNA:   3'- -GCggCGCCCGGGC----------CCGCGGGuCUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.