miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 47702 0.66 0.371615
Target:  5'- gCGCCGCGucggcGGCgUCGGGgGCCUccucggcGGACAc -3'
miRNA:   3'- -GCGGCGC-----CCG-GGCCCgCGGG-------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 6442 0.66 0.364788
Target:  5'- gGuCCGgGGGCcggCCGGGCuGCCCGcACAc -3'
miRNA:   3'- gC-GGCgCCCG---GGCCCG-CGGGUcUGUu -5'
23713 3' -67.7 NC_005261.1 + 40230 0.66 0.364788
Target:  5'- uCGUCGUcucuGGCCCGGGgGCCguGAg-- -3'
miRNA:   3'- -GCGGCGc---CCGGGCCCgCGGguCUguu -5'
23713 3' -67.7 NC_005261.1 + 84552 0.66 0.364788
Target:  5'- --aCGCGGGCCCa-GCGCCUGGAgCAc -3'
miRNA:   3'- gcgGCGCCCGGGccCGCGGGUCU-GUu -5'
23713 3' -67.7 NC_005261.1 + 18651 0.66 0.364788
Target:  5'- gGCUcccaggucucggGCGGGCCCcagcgggcgaagGGGC-CCCAGGCu- -3'
miRNA:   3'- gCGG------------CGCCCGGG------------CCCGcGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 29424 0.66 0.364035
Target:  5'- gGCCGCgGGGCCCGcGGcCGUguucgugCCGGAgAu -3'
miRNA:   3'- gCGGCG-CCCGGGC-CC-GCG-------GGUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 17915 0.66 0.364035
Target:  5'- gCGCCGauuagcagcgaguCGGGCCCGcuGGCGuUCCGGAaCAu -3'
miRNA:   3'- -GCGGC-------------GCCCGGGC--CCGC-GGGUCU-GUu -5'
23713 3' -67.7 NC_005261.1 + 30559 0.66 0.357305
Target:  5'- cCGCCGCc-GCCgGGGC-CUCGGACGGg -3'
miRNA:   3'- -GCGGCGccCGGgCCCGcGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 102796 0.66 0.357305
Target:  5'- gGCCGCGaGCgC-GGCGCCCAGcCGc -3'
miRNA:   3'- gCGGCGCcCGgGcCCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 91488 0.66 0.357305
Target:  5'- cCGCCGCGGccgccGCCCGccccgcGCGCCUgcuggucucGGACAu -3'
miRNA:   3'- -GCGGCGCC-----CGGGCc-----CGCGGG---------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 82597 0.66 0.357305
Target:  5'- uCGuuGCGcuGGUCCGGGCGCgugagccgCCGGAUc- -3'
miRNA:   3'- -GCggCGC--CCGGGCCCGCG--------GGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 27722 0.66 0.357305
Target:  5'- uCGCCGCGGGaggagCGGaGaCGCgCGGGCAGa -3'
miRNA:   3'- -GCGGCGCCCgg---GCC-C-GCGgGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 11218 0.66 0.357305
Target:  5'- aCGCCGCGuGGCCCcccgcGGGCGCgCu----- -3'
miRNA:   3'- -GCGGCGC-CCGGG-----CCCGCGgGucuguu -5'
23713 3' -67.7 NC_005261.1 + 29114 0.66 0.34993
Target:  5'- aCGCCGaggGGaGCCCuGGCGCCgGGGgGc -3'
miRNA:   3'- -GCGGCg--CC-CGGGcCCGCGGgUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 23824 0.66 0.34993
Target:  5'- uGCCccggGCGGGCCggcuagggUGGGCucGCCgGGGCAGg -3'
miRNA:   3'- gCGG----CGCCCGG--------GCCCG--CGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 65394 0.66 0.34993
Target:  5'- uGCgGCGGG-UUGGGCGgCCCcGGCAGc -3'
miRNA:   3'- gCGgCGCCCgGGCCCGC-GGGuCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 2621 0.66 0.34993
Target:  5'- gGCCGcCGGGCggcaUGGG-GCCCAGcACGc -3'
miRNA:   3'- gCGGC-GCCCGg---GCCCgCGGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 130586 0.66 0.34993
Target:  5'- cCGCCGCGcGGCCCc-GCGCCUGGcCc- -3'
miRNA:   3'- -GCGGCGC-CCGGGccCGCGGGUCuGuu -5'
23713 3' -67.7 NC_005261.1 + 82278 0.66 0.34993
Target:  5'- cCGCCGCuGGUCgCGGaugcaGCGCCCgAGGCu- -3'
miRNA:   3'- -GCGGCGcCCGG-GCC-----CGCGGG-UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 31734 0.66 0.34993
Target:  5'- gGCCGCGcgauGGCCCGGcCG-UCGGGCAGg -3'
miRNA:   3'- gCGGCGC----CCGGGCCcGCgGGUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.