miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 101874 0.66 0.335508
Target:  5'- aCGuCCGCGcGCa-GGGCGCCCAGcCGc -3'
miRNA:   3'- -GC-GGCGCcCGggCCCGCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 23152 0.66 0.334799
Target:  5'- gGCCccaaagaGUGGGCCCGgcaGGCGCgCCggGGGCGAc -3'
miRNA:   3'- gCGG-------CGCCCGGGC---CCGCG-GG--UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 117857 0.66 0.333383
Target:  5'- gCGUCGCguuauucgggGGGaCCCGGgaccggccauguucGCGUCCAGACGGg -3'
miRNA:   3'- -GCGGCG----------CCC-GGGCC--------------CGCGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 97897 0.67 0.328462
Target:  5'- gGCCgGCGGaccGUCUGGGCGCC-GGGCGu -3'
miRNA:   3'- gCGG-CGCC---CGGGCCCGCGGgUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 66266 0.67 0.328462
Target:  5'- aCGCCGUcca-CCGGGCGCCCGcGGCu- -3'
miRNA:   3'- -GCGGCGcccgGGCCCGCGGGU-CUGuu -5'
23713 3' -67.7 NC_005261.1 + 17549 0.67 0.328462
Target:  5'- gCGgCGCGGGCCCGccguucGGCggugGCCUugcGGGCGAg -3'
miRNA:   3'- -GCgGCGCCCGGGC------CCG----CGGG---UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 118028 0.67 0.328462
Target:  5'- aCGCaCGCgGGGCCCGGccgcgaCGCCCGcgcuGGCGg -3'
miRNA:   3'- -GCG-GCG-CCCGGGCCc-----GCGGGU----CUGUu -5'
23713 3' -67.7 NC_005261.1 + 133828 0.67 0.328462
Target:  5'- gCGCUGCGcGGCCgCGuGcGCGCCguGGCc- -3'
miRNA:   3'- -GCGGCGC-CCGG-GC-C-CGCGGguCUGuu -5'
23713 3' -67.7 NC_005261.1 + 28509 0.67 0.328462
Target:  5'- aGuCCGCGgaccucGGCCCggagGGGgGCCCGGAgGAg -3'
miRNA:   3'- gC-GGCGC------CCGGG----CCCgCGGGUCUgUU- -5'
23713 3' -67.7 NC_005261.1 + 67524 0.67 0.328462
Target:  5'- uCGCCGCGGcGCCCGcGGCGgCgA-ACGu -3'
miRNA:   3'- -GCGGCGCC-CGGGC-CCGCgGgUcUGUu -5'
23713 3' -67.7 NC_005261.1 + 44036 0.67 0.328462
Target:  5'- cCGCCGCGcggcGGCCgCGGGCGggcagcagaUCCAGgACGc -3'
miRNA:   3'- -GCGGCGC----CCGG-GCCCGC---------GGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 90116 0.67 0.328462
Target:  5'- gGCCGaCGcGGCCCGcGGCGa--GGGCGAg -3'
miRNA:   3'- gCGGC-GC-CCGGGC-CCGCgggUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 104994 0.67 0.328462
Target:  5'- gCGCCcagcGCGGGCggcgguCgGGGCGCCaGGGCGGu -3'
miRNA:   3'- -GCGG----CGCCCG------GgCCCGCGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 87994 0.67 0.325674
Target:  5'- gCGCCggcuccucccccgGCGGGCCCGuuaaagcggccggcGGUGCCUggGGGCGGu -3'
miRNA:   3'- -GCGG-------------CGCCCGGGC--------------CCGCGGG--UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 37751 0.67 0.324287
Target:  5'- -cCCGCGGGCgCCGcgccgcccaagcgccGGCGCCCcaacGGACu- -3'
miRNA:   3'- gcGGCGCCCG-GGC---------------CCGCGGG----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 4294 0.67 0.321525
Target:  5'- gGCCGCGGGcCCCGcGGcCGCCgcgUAGcGCGc -3'
miRNA:   3'- gCGGCGCCC-GGGC-CC-GCGG---GUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 3896 0.67 0.321525
Target:  5'- gGCgaGCGcGGCgCGGGCGCCCGcGCc- -3'
miRNA:   3'- gCGg-CGC-CCGgGCCCGCGGGUcUGuu -5'
23713 3' -67.7 NC_005261.1 + 47221 0.67 0.321525
Target:  5'- uCGCCGCcgGGGCUCagcugGGGC-CCCAGAa-- -3'
miRNA:   3'- -GCGGCG--CCCGGG-----CCCGcGGGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 87797 0.67 0.321525
Target:  5'- cCGCCGCGuccauGGCCgGcGGgGCUgGGACGGg -3'
miRNA:   3'- -GCGGCGC-----CCGGgC-CCgCGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 30890 0.67 0.321525
Target:  5'- uGCCGCccgagcucGGGCUgGGGcCGCCCGGcCc- -3'
miRNA:   3'- gCGGCG--------CCCGGgCCC-GCGGGUCuGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.