miRNA display CGI


Results 81 - 100 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 30890 0.67 0.321525
Target:  5'- uGCCGCccgagcucGGGCUgGGGcCGCCCGGcCc- -3'
miRNA:   3'- gCGGCG--------CCCGGgCCC-GCGGGUCuGuu -5'
23713 3' -67.7 NC_005261.1 + 48325 0.67 0.321525
Target:  5'- gGCC-CGGGCUCggGGGCGCgCGcGGCGAg -3'
miRNA:   3'- gCGGcGCCCGGG--CCCGCGgGU-CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 3896 0.67 0.321525
Target:  5'- gGCgaGCGcGGCgCGGGCGCCCGcGCc- -3'
miRNA:   3'- gCGg-CGC-CCGgGCCCGCGGGUcUGuu -5'
23713 3' -67.7 NC_005261.1 + 33473 0.67 0.321525
Target:  5'- cCGCCGCagccGGGCCCGcucgcGGgGCCCgcgagcaccagGGGCGg -3'
miRNA:   3'- -GCGGCG----CCCGGGC-----CCgCGGG-----------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 87797 0.67 0.321525
Target:  5'- cCGCCGCGuccauGGCCgGcGGgGCUgGGACGGg -3'
miRNA:   3'- -GCGGCGC-----CCGGgC-CCgCGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 22655 0.67 0.320838
Target:  5'- gCGCUgGCGGcGCCUGGGCggcGCCCgagugccgccgggGGACGGg -3'
miRNA:   3'- -GCGG-CGCC-CGGGCCCG---CGGG-------------UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 75812 0.67 0.320838
Target:  5'- gGCaCGCuGGuGCCCGGcgcggccGCGCCCGGGgAGg -3'
miRNA:   3'- gCG-GCG-CC-CGGGCC-------CGCGGGUCUgUU- -5'
23713 3' -67.7 NC_005261.1 + 88587 0.67 0.320838
Target:  5'- uCGCCGcCGaGGCCCGgcccggcGGCGCCaCGGuCGu -3'
miRNA:   3'- -GCGGC-GC-CCGGGC-------CCGCGG-GUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 132871 0.67 0.320838
Target:  5'- aGCCuGCGccugcccuucuucGGCaagCCGGGCGCCgCGGGCGg -3'
miRNA:   3'- gCGG-CGC-------------CCG---GGCCCGCGG-GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 94861 0.67 0.314699
Target:  5'- gCGCuCGCGcacGGCCCGGGCgggcgGCCCGcguGCAGc -3'
miRNA:   3'- -GCG-GCGC---CCGGGCCCG-----CGGGUc--UGUU- -5'
23713 3' -67.7 NC_005261.1 + 16054 0.67 0.314699
Target:  5'- gGCaGCGGGCCCGcgccgagccGGCGCgUguAGACGAa -3'
miRNA:   3'- gCGgCGCCCGGGC---------CCGCGgG--UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 2805 0.67 0.314699
Target:  5'- gGCCGggaGGGgCCGGGCGgCCCcagcccgagcucGGGCGg -3'
miRNA:   3'- gCGGCg--CCCgGGCCCGC-GGG------------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 17468 0.67 0.314699
Target:  5'- -aCUGCGGGCagacgCGGGCGCgCCGGGgGGu -3'
miRNA:   3'- gcGGCGCCCGg----GCCCGCG-GGUCUgUU- -5'
23713 3' -67.7 NC_005261.1 + 43140 0.67 0.314699
Target:  5'- aCGCgCGCGcGGCCUGcGCGCCgCcGACAu -3'
miRNA:   3'- -GCG-GCGC-CCGGGCcCGCGG-GuCUGUu -5'
23713 3' -67.7 NC_005261.1 + 58274 0.67 0.314699
Target:  5'- uCGCCGCgcucacGGGgCCGGcGCGCCgGGGgGc -3'
miRNA:   3'- -GCGGCG------CCCgGGCC-CGCGGgUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 33361 0.67 0.314699
Target:  5'- cCGCCGcCGGGCCgcgccgggcugCGGGCcGCCgCAGcCGc -3'
miRNA:   3'- -GCGGC-GCCCGG-----------GCCCG-CGG-GUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 4531 0.67 0.314699
Target:  5'- gCGCCGCggcgaGGGCgCCGGGCccugGCCUuGGCu- -3'
miRNA:   3'- -GCGGCG-----CCCG-GGCCCG----CGGGuCUGuu -5'
23713 3' -67.7 NC_005261.1 + 54367 0.67 0.314022
Target:  5'- gGuCCGCGGGCagcggcuCgGGGCGCCCgcgaAGGCc- -3'
miRNA:   3'- gC-GGCGCCCG-------GgCCCGCGGG----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 43411 0.67 0.310656
Target:  5'- gCGCCGgGGGCggccuccgccgCCGgcggggagcuggcucGGCGCCUGGACGu -3'
miRNA:   3'- -GCGGCgCCCG-----------GGC---------------CCGCGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 32142 0.67 0.307983
Target:  5'- cCGCUGgGGGCUCGGcGCGCCgCugcGGCc- -3'
miRNA:   3'- -GCGGCgCCCGGGCC-CGCGG-Gu--CUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.