miRNA display CGI


Results 21 - 40 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 4926 0.71 0.170176
Target:  5'- cCGCCGCGGccgcgagcGCCCGcGCcgcgGCCCAGGCGc -3'
miRNA:   3'- -GCGGCGCC--------CGGGCcCG----CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 4969 0.73 0.124349
Target:  5'- gGCCGCggcguccucugGGGCCCggaGGGCGCCgAGGCc- -3'
miRNA:   3'- gCGGCG-----------CCCGGG---CCCGCGGgUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 6184 0.7 0.200692
Target:  5'- cCGCCuaggugcgaggGCGGGCCCagcuGGCccGCCCAGACc- -3'
miRNA:   3'- -GCGG-----------CGCCCGGGc---CCG--CGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 6442 0.66 0.364788
Target:  5'- gGuCCGgGGGCcggCCGGGCuGCCCGcACAc -3'
miRNA:   3'- gC-GGCgCCCG---GGCCCG-CGGGUcUGUu -5'
23713 3' -67.7 NC_005261.1 + 8807 0.73 0.127423
Target:  5'- cCGCCGaGGGCUUgaagGGGCGCCCgccGGGCAAg -3'
miRNA:   3'- -GCGGCgCCCGGG----CCCGCGGG---UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 9606 0.69 0.220191
Target:  5'- cCGCCuCGGGCCCgGGGUGggCAGGCGGg -3'
miRNA:   3'- -GCGGcGCCCGGG-CCCGCggGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 10202 0.68 0.246813
Target:  5'- cCGaCCGCgugcucccaGGGCCCGcGCcuGCCCAGGCGGg -3'
miRNA:   3'- -GC-GGCG---------CCCGGGCcCG--CGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 10254 0.76 0.07762
Target:  5'- cCGCCGCGGGCCUGGcGCcuucuGCCCuGAgGAc -3'
miRNA:   3'- -GCGGCGCCCGGGCC-CG-----CGGGuCUgUU- -5'
23713 3' -67.7 NC_005261.1 + 10517 0.69 0.235857
Target:  5'- cCGCUGCGGGCCCcgcGGcGCGCUCGcugucgcccccGGCGc -3'
miRNA:   3'- -GCGGCGCCCGGG---CC-CGCGGGU-----------CUGUu -5'
23713 3' -67.7 NC_005261.1 + 11025 0.69 0.218674
Target:  5'- uCGUCGcCGGGCCCGucccccGGCggcacucgggcgccGCCCAGGCGc -3'
miRNA:   3'- -GCGGC-GCCCGGGC------CCG--------------CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 11218 0.66 0.357305
Target:  5'- aCGCCGCGuGGCCCcccgcGGGCGCgCu----- -3'
miRNA:   3'- -GCGGCGC-CCGGG-----CCCGCGgGucuguu -5'
23713 3' -67.7 NC_005261.1 + 11906 0.74 0.104683
Target:  5'- cCGCCGCGGGCCCGGccCGgCCGG-CGg -3'
miRNA:   3'- -GCGGCGCCCGGGCCc-GCgGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 11945 0.71 0.162252
Target:  5'- gCGCCGCGGcggcucGCCCGGcGCGCgcuCCAGcGCAGc -3'
miRNA:   3'- -GCGGCGCC------CGGGCC-CGCG---GGUC-UGUU- -5'
23713 3' -67.7 NC_005261.1 + 12300 0.76 0.07019
Target:  5'- cCGCCGCGGGCaCGGGCGCgUAGcCGg -3'
miRNA:   3'- -GCGGCGCCCGgGCCCGCGgGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 12565 0.66 0.379302
Target:  5'- gCGCCgggcaacGCGGGgCCgagagGGGCGCCUAG-CGGa -3'
miRNA:   3'- -GCGG-------CGCCCgGG-----CCCGCGGGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 12724 0.71 0.170176
Target:  5'- gGCgCGCGGGCCCGccGGCcCCCuGGGCGGg -3'
miRNA:   3'- gCG-GCGCCCGGGC--CCGcGGG-UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 13126 0.7 0.20734
Target:  5'- gGCCGCGGGgCgcguguggucggugaCGGcGCGCaCCAGGCGGu -3'
miRNA:   3'- gCGGCGCCCgG---------------GCC-CGCG-GGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 13666 0.72 0.133785
Target:  5'- cCGCCGCgggggGGGCgCgGGGCGCgCGGGCGu -3'
miRNA:   3'- -GCGGCG-----CCCG-GgCCCGCGgGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 14362 0.67 0.288493
Target:  5'- aGCCGC-GGCCgGGGCGgCgCGGugGc -3'
miRNA:   3'- gCGGCGcCCGGgCCCGCgG-GUCugUu -5'
23713 3' -67.7 NC_005261.1 + 15498 0.66 0.372379
Target:  5'- uCGCUGCGGGCggggCGugugucGGCGUgCAGGCAGg -3'
miRNA:   3'- -GCGGCGCCCGg---GC------CCGCGgGUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.