miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 15923 0.78 0.05449
Target:  5'- aGCCG-GGGCCgGGGCcgggGCCCGGGCAGg -3'
miRNA:   3'- gCGGCgCCCGGgCCCG----CGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 15971 0.7 0.191517
Target:  5'- gGCgGgggaGGGCCCGGGCcgcucaCCCGGGCAGc -3'
miRNA:   3'- gCGgCg---CCCGGGCCCGc-----GGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 16054 0.67 0.314699
Target:  5'- gGCaGCGGGCCCGcgccgagccGGCGCgUguAGACGAa -3'
miRNA:   3'- gCGgCGCCCGGGC---------CCGCGgG--UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 16262 0.71 0.162252
Target:  5'- gGCCGcCGGGgCCGGGCuucggcucGCCCGGGgGg -3'
miRNA:   3'- gCGGC-GCCCgGGCCCG--------CGGGUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 16297 0.75 0.092468
Target:  5'- gCGCCGuCGGGCCCaGcGGCGgCCGGGCc- -3'
miRNA:   3'- -GCGGC-GCCCGGG-C-CCGCgGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 17170 0.69 0.235857
Target:  5'- gCGgCGCGGGCgUGGGCaGCCCugccgcGGCGg -3'
miRNA:   3'- -GCgGCGCCCGgGCCCG-CGGGu-----CUGUu -5'
23713 3' -67.7 NC_005261.1 + 17319 0.68 0.284714
Target:  5'- gGUCGCGgcccGGCCCGGcccagcucccgcccCGCCCGGGCAc -3'
miRNA:   3'- gCGGCGC----CCGGGCCc-------------GCGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 17468 0.67 0.314699
Target:  5'- -aCUGCGGGCagacgCGGGCGCgCCGGGgGGu -3'
miRNA:   3'- gcGGCGCCCGg----GCCCGCG-GGUCUgUU- -5'
23713 3' -67.7 NC_005261.1 + 17549 0.67 0.328462
Target:  5'- gCGgCGCGGGCCCGccguucGGCggugGCCUugcGGGCGAg -3'
miRNA:   3'- -GCgGCGCCCGGGC------CCG----CGGG---UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 17915 0.66 0.364035
Target:  5'- gCGCCGauuagcagcgaguCGGGCCCGcuGGCGuUCCGGAaCAu -3'
miRNA:   3'- -GCGGC-------------GCCCGGGC--CCGC-GGGUCU-GUu -5'
23713 3' -67.7 NC_005261.1 + 18651 0.66 0.364788
Target:  5'- gGCUcccaggucucggGCGGGCCCcagcgggcgaagGGGC-CCCAGGCu- -3'
miRNA:   3'- gCGG------------CGCCCGGG------------CCCGcGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 19877 0.67 0.307983
Target:  5'- cCGCCgGCGGGCCCGucgucGC-CCCAGuCGc -3'
miRNA:   3'- -GCGG-CGCCCGGGCc----CGcGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 20120 0.7 0.182712
Target:  5'- gGCgCGCGGGCCCGcagcggcuccgcGaGCGCUCAGGCc- -3'
miRNA:   3'- gCG-GCGCCCGGGC------------C-CGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 20246 0.68 0.252447
Target:  5'- cCGCCGCGcGCUCcauGGGCGCCgAGAa-- -3'
miRNA:   3'- -GCGGCGCcCGGG---CCCGCGGgUCUguu -5'
23713 3' -67.7 NC_005261.1 + 20869 0.68 0.280353
Target:  5'- gCGCCGCGGGCCggccaucgccagcuCGuGGCcGCCauaugAGACAc -3'
miRNA:   3'- -GCGGCGCCCGG--------------GC-CCG-CGGg----UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 21749 0.66 0.372379
Target:  5'- gGCUGCuGcGCCUGGaGCGCgcgCCGGGCGAg -3'
miRNA:   3'- gCGGCGcC-CGGGCC-CGCG---GGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 21786 0.68 0.284714
Target:  5'- gCGgCGCGGGCcgccgcagccgccggCCGGGCcggGCCCGcGGCGGg -3'
miRNA:   3'- -GCgGCGCCCG---------------GGCCCG---CGGGU-CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 22655 0.67 0.320838
Target:  5'- gCGCUgGCGGcGCCUGGGCggcGCCCgagugccgccgggGGACGGg -3'
miRNA:   3'- -GCGG-CGCC-CGGGCCCG---CGGG-------------UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 23152 0.66 0.334799
Target:  5'- gGCCccaaagaGUGGGCCCGgcaGGCGCgCCggGGGCGAc -3'
miRNA:   3'- gCGG-------CGCCCGGGC---CCGCG-GG--UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 23199 0.7 0.205421
Target:  5'- gCGCCGCgGGGCCCGcagcGGCGgCCGcGCGc -3'
miRNA:   3'- -GCGGCG-CCCGGGC----CCGCgGGUcUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.