miRNA display CGI


Results 61 - 80 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 23428 0.68 0.269986
Target:  5'- gCGCUGCGcGUCgGGGCGCCaguccucaGGGCAGa -3'
miRNA:   3'- -GCGGCGCcCGGgCCCGCGGg-------UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 23506 0.67 0.321525
Target:  5'- aGgCGCGGGCCCuGGGagcaCGCggUCGGGCGAg -3'
miRNA:   3'- gCgGCGCCCGGG-CCC----GCG--GGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 23767 0.66 0.34993
Target:  5'- uGCCccggGCGGGCCggcuagggUGGGCucGCCgGGGCAGg -3'
miRNA:   3'- gCGG----CGCCCGG--------GCCCG--CGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 23824 0.66 0.34993
Target:  5'- uGCCccggGCGGGCCggcuagggUGGGCucGCCgGGGCAGg -3'
miRNA:   3'- gCGG----CGCCCGG--------GCCCG--CGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 24397 0.66 0.335508
Target:  5'- gGCgGCGGGgcgguCCUGGGgGCUCGGAUc- -3'
miRNA:   3'- gCGgCGCCC-----GGGCCCgCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 27463 0.68 0.262268
Target:  5'- cCGCCccGCGGGgcgggcaggcccucCCCGGGCGCaCCuGGACc- -3'
miRNA:   3'- -GCGG--CGCCC--------------GGGCCCGCG-GG-UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 27722 0.66 0.357305
Target:  5'- uCGCCGCGGGaggagCGGaGaCGCgCGGGCAGa -3'
miRNA:   3'- -GCGGCGCCCgg---GCC-C-GCGgGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 28509 0.67 0.328462
Target:  5'- aGuCCGCGgaccucGGCCCggagGGGgGCCCGGAgGAg -3'
miRNA:   3'- gC-GGCGC------CCGGG----CCCgCGGGUCUgUU- -5'
23713 3' -67.7 NC_005261.1 + 28714 0.68 0.276047
Target:  5'- -cCCgGgGGGCCCGGGgGCCUcGGCGc -3'
miRNA:   3'- gcGG-CgCCCGGGCCCgCGGGuCUGUu -5'
23713 3' -67.7 NC_005261.1 + 28758 0.73 0.121343
Target:  5'- aCGCCGC-GGCCgGgGGCGCCUGGGCc- -3'
miRNA:   3'- -GCGGCGcCCGGgC-CCGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 29114 0.66 0.34993
Target:  5'- aCGCCGaggGGaGCCCuGGCGCCgGGGgGc -3'
miRNA:   3'- -GCGGCg--CC-CGGGcCCGCGGgUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 29194 0.71 0.167763
Target:  5'- uCGCCGCGGcGCCCGcgcgggcgcgcgacuGGgGCCCGcGCAGg -3'
miRNA:   3'- -GCGGCGCC-CGGGC---------------CCgCGGGUcUGUU- -5'
23713 3' -67.7 NC_005261.1 + 29266 0.66 0.335508
Target:  5'- cCGCCGCuggaGGGCCCGcugcuGaCGCCCuccGGCGAg -3'
miRNA:   3'- -GCGGCG----CCCGGGCc----C-GCGGGu--CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 29424 0.66 0.364035
Target:  5'- gGCCGCgGGGCCCGcGGcCGUguucgugCCGGAgAu -3'
miRNA:   3'- gCGGCG-CCCGGGC-CC-GCG-------GGUCUgUu -5'
23713 3' -67.7 NC_005261.1 + 29543 0.69 0.23532
Target:  5'- aGCuCGCGGGCCCGGaccugcagcuggcGCGCCUgcuGCAGc -3'
miRNA:   3'- gCG-GCGCCCGGGCC-------------CGCGGGuc-UGUU- -5'
23713 3' -67.7 NC_005261.1 + 29807 0.68 0.252447
Target:  5'- gCGCCG-GcGGCgCGGGCGCCCGcGCc- -3'
miRNA:   3'- -GCGGCgC-CCGgGCCCGCGGGUcUGuu -5'
23713 3' -67.7 NC_005261.1 + 29863 0.74 0.109172
Target:  5'- gGCCGCGcGGCgCCGGcgccgcugccgccaGCGCCCGGGCc- -3'
miRNA:   3'- gCGGCGC-CCG-GGCC--------------CGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 30042 0.69 0.23532
Target:  5'- gGCCGCGGccugccgGCCgCGGccuGCGCuCCAGACGc -3'
miRNA:   3'- gCGGCGCC-------CGG-GCC---CGCG-GGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 30263 0.68 0.276047
Target:  5'- gCGCgGCGcggcGGCCCGcGCGCCCgccuGGACGc -3'
miRNA:   3'- -GCGgCGC----CCGGGCcCGCGGG----UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 30347 0.68 0.269986
Target:  5'- gGCCGCGcucgcGGCCCugaaggccGGCGCgCCGGGCGc -3'
miRNA:   3'- gCGGCGC-----CCGGGc-------CCGCG-GGUCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.