miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 138008 0.67 0.301376
Target:  5'- gGCUGCGGcggcccgcaGCCCGGcGCGgCCCGGcgGCGGu -3'
miRNA:   3'- gCGGCGCC---------CGGGCC-CGC-GGGUC--UGUU- -5'
23713 3' -67.7 NC_005261.1 + 135011 0.69 0.225312
Target:  5'- gCGCgGCGGGCCCGcacGCGgCCGcGGCGg -3'
miRNA:   3'- -GCGgCGCCCGGGCc--CGCgGGU-CUGUu -5'
23713 3' -67.7 NC_005261.1 + 134949 0.7 0.195599
Target:  5'- aGCCGaUGGGCgaGGGCGCCggcgacgCAGACGg -3'
miRNA:   3'- gCGGC-GCCCGggCCCGCGG-------GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 133828 0.67 0.328462
Target:  5'- gCGCUGCGcGGCCgCGuGcGCGCCguGGCc- -3'
miRNA:   3'- -GCGGCGC-CCGG-GC-C-CGCGGguCUGuu -5'
23713 3' -67.7 NC_005261.1 + 132871 0.67 0.320838
Target:  5'- aGCCuGCGccugcccuucuucGGCaagCCGGGCGCCgCGGGCGg -3'
miRNA:   3'- gCGG-CGC-------------CCG---GGCCCGCGG-GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 132615 0.66 0.342665
Target:  5'- aGCCGCcaggGGGCgCuGGCGCCgaGGACGc -3'
miRNA:   3'- gCGGCG----CCCGgGcCCGCGGg-UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 131931 0.67 0.301376
Target:  5'- gCGCgCGCGGGaCCGcGGUGCCCGcGCc- -3'
miRNA:   3'- -GCG-GCGCCCgGGC-CCGCGGGUcUGuu -5'
23713 3' -67.7 NC_005261.1 + 131780 0.67 0.29488
Target:  5'- gCGCCGCuGGGCCCcgacgccGCGCCCGccgcgccuGACGg -3'
miRNA:   3'- -GCGGCG-CCCGGGcc-----CGCGGGU--------CUGUu -5'
23713 3' -67.7 NC_005261.1 + 131635 0.68 0.252447
Target:  5'- cCGCCGCGaGGaccgacgggcccCCCGGGCGCaCCGucuGCGAg -3'
miRNA:   3'- -GCGGCGC-CC------------GGGCCCGCG-GGUc--UGUU- -5'
23713 3' -67.7 NC_005261.1 + 130586 0.66 0.34993
Target:  5'- cCGCCGCGcGGCCCc-GCGCCUGGcCc- -3'
miRNA:   3'- -GCGGCGC-CCGGGccCGCGGGUCuGuu -5'
23713 3' -67.7 NC_005261.1 + 129615 0.75 0.087971
Target:  5'- uCGCgGCGGGgUCGGGCGCCuuugCAGGCGg -3'
miRNA:   3'- -GCGgCGCCCgGGCCCGCGG----GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 128784 0.72 0.130569
Target:  5'- gCGCCGUu-GUCUGGGCGCCCGGGCc- -3'
miRNA:   3'- -GCGGCGccCGGGCCCGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 127894 0.72 0.133785
Target:  5'- gCGcCCGuCGGGCCCGGGCcugggcuuggGCUCGGGCc- -3'
miRNA:   3'- -GC-GGC-GCCCGGGCCCG----------CGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 127750 0.67 0.321525
Target:  5'- gGCgggaGCGGGCCgcggCGGGCGCgaAGACGc -3'
miRNA:   3'- gCGg---CGCCCGG----GCCCGCGggUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 127564 0.68 0.276047
Target:  5'- aCGCgUGCGucGGCCCgcaccaGGGCGCCCuGGGCGu -3'
miRNA:   3'- -GCG-GCGC--CCGGG------CCCGCGGG-UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 126940 0.68 0.269986
Target:  5'- gCGCgGCcagGGGCgCCGGGCGCggGGGCGg -3'
miRNA:   3'- -GCGgCG---CCCG-GGCCCGCGggUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 126505 0.69 0.21517
Target:  5'- uGCCGCaGGcggucuGCCUGGGCGCCCGcGCc- -3'
miRNA:   3'- gCGGCG-CC------CGGGCCCGCGGGUcUGuu -5'
23713 3' -67.7 NC_005261.1 + 125819 0.68 0.246255
Target:  5'- cCGCCGCgagcgGGGCcggaCCGGGCuuugcaaGCCCAGcCAAg -3'
miRNA:   3'- -GCGGCG-----CCCG----GGCCCG-------CGGGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 125739 0.69 0.23532
Target:  5'- cCGCCGCaaggGGGCCgGGGCcagggcuGCCgCGGGCu- -3'
miRNA:   3'- -GCGGCG----CCCGGgCCCG-------CGG-GUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 125681 0.66 0.335508
Target:  5'- cCGCCGaauGGGUuugCCGGGCuugGCCCGG-CGAc -3'
miRNA:   3'- -GCGGCg--CCCG---GGCCCG---CGGGUCuGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.