miRNA display CGI


Results 21 - 40 of 309 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 125295 0.7 0.191517
Target:  5'- gGCCGCGGGCgCCggacccgcGGGCGCuCCGcGGCc- -3'
miRNA:   3'- gCGGCGCCCG-GG--------CCCGCG-GGU-CUGuu -5'
23713 3' -67.7 NC_005261.1 + 124440 0.72 0.133785
Target:  5'- gCGCCGCcacaccagccGGGgCCGGGUGCCCucagGGGCGc -3'
miRNA:   3'- -GCGGCG----------CCCgGGCCCGCGGG----UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 124244 0.7 0.205421
Target:  5'- cCGCCGCGGGCa--GGCGCCgCGcGGCGc -3'
miRNA:   3'- -GCGGCGCCCGggcCCGCGG-GU-CUGUu -5'
23713 3' -67.7 NC_005261.1 + 123210 0.69 0.214673
Target:  5'- cCGCCGCGuaagcgcGGCCUGccgccuagcGGcCGCCCAGGCGc -3'
miRNA:   3'- -GCGGCGC-------CCGGGC---------CC-GCGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 121191 0.72 0.137075
Target:  5'- gGCCGgggcCGGGCCCGGG-GCCgCGGGCc- -3'
miRNA:   3'- gCGGC----GCCCGGGCCCgCGG-GUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 119062 0.66 0.378528
Target:  5'- gGCCGCGcgugugcuuucguGGCCCGGGCcacgaaaGCacaGGACGGg -3'
miRNA:   3'- gCGGCGC-------------CCGGGCCCG-------CGgg-UCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 118924 0.7 0.196057
Target:  5'- gCGCCGCGGGCgC-GGCGCCgCGcGGCu- -3'
miRNA:   3'- -GCGGCGCCCGgGcCCGCGG-GU-CUGuu -5'
23713 3' -67.7 NC_005261.1 + 118633 0.71 0.178445
Target:  5'- cCGCCGCGGcggcGCuCUGGGC-CCCGGGCc- -3'
miRNA:   3'- -GCGGCGCC----CG-GGCCCGcGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 118497 0.68 0.276047
Target:  5'- gCGCUGCGGaCCCuGGCGCCgCucGGCGAg -3'
miRNA:   3'- -GCGGCGCCcGGGcCCGCGG-Gu-CUGUU- -5'
23713 3' -67.7 NC_005261.1 + 118435 0.68 0.258187
Target:  5'- cCGCCGCGGacGCcgCCGcGGCGCUagaAGACAc -3'
miRNA:   3'- -GCGGCGCC--CG--GGC-CCGCGGg--UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 118379 0.67 0.301376
Target:  5'- gGgCGCGcGGCCCGaGGCGCUggcggccgCGGGCGc -3'
miRNA:   3'- gCgGCGC-CCGGGC-CCGCGG--------GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 118294 0.72 0.147394
Target:  5'- cCGCCGCGGGCaCCgGGGCGCaCUuccGCAc -3'
miRNA:   3'- -GCGGCGCCCG-GG-CCCGCG-GGuc-UGUu -5'
23713 3' -67.7 NC_005261.1 + 118190 0.71 0.169772
Target:  5'- gGCCGCGGGCCCc-GCGCCUgccgcgcugcgcgGGGCGc -3'
miRNA:   3'- gCGGCGCCCGGGccCGCGGG-------------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 118028 0.67 0.328462
Target:  5'- aCGCaCGCgGGGCCCGGccgcgaCGCCCGcgcuGGCGg -3'
miRNA:   3'- -GCG-GCG-CCCGGGCCc-----GCGGGU----CUGUu -5'
23713 3' -67.7 NC_005261.1 + 117857 0.66 0.333383
Target:  5'- gCGUCGCguuauucgggGGGaCCCGGgaccggccauguucGCGUCCAGACGGg -3'
miRNA:   3'- -GCGGCG----------CCC-GGGCC--------------CGCGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 117672 0.66 0.341944
Target:  5'- cCGCCGCgcccggccGGGCCCGcGGCgaggccgGCCCugAGGCc- -3'
miRNA:   3'- -GCGGCG--------CCCGGGC-CCG-------CGGG--UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 116926 0.69 0.235857
Target:  5'- cCGCCGCGGGCugCUGGacgccuuccGCGCCaacaAGACGc -3'
miRNA:   3'- -GCGGCGCCCG--GGCC---------CGCGGg---UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 116478 0.67 0.307983
Target:  5'- cCGgCGCGGGCggggCGGGCGCgCGGuAUAAa -3'
miRNA:   3'- -GCgGCGCCCGg---GCCCGCGgGUC-UGUU- -5'
23713 3' -67.7 NC_005261.1 + 115851 0.68 0.269386
Target:  5'- gGcCCGCGcGGCCCccgccgaGGcGCGCCCGG-CAAu -3'
miRNA:   3'- gC-GGCGC-CCGGG-------CC-CGCGGGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 115480 0.67 0.301376
Target:  5'- gGUCGCGGGCUCGGccgcggcggcGCGCCgCAGcccccGCAc -3'
miRNA:   3'- gCGGCGCCCGGGCC----------CGCGG-GUC-----UGUu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.