miRNA display CGI


Results 41 - 60 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 115154 0.7 0.205421
Target:  5'- aGCCGgGGG-UCGGGCGCCUccugcgcgauGGGCAc -3'
miRNA:   3'- gCGGCgCCCgGGCCCGCGGG----------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 113585 0.7 0.210247
Target:  5'- cCGCCGCgcuGGGCgaCCucGCGCCCGGGCAc -3'
miRNA:   3'- -GCGGCG---CCCG--GGccCGCGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 113306 0.73 0.118404
Target:  5'- uGCCGCGGGCCUGG--GCCCGGcugcGCGAg -3'
miRNA:   3'- gCGGCGCCCGGGCCcgCGGGUC----UGUU- -5'
23713 3' -67.7 NC_005261.1 + 111773 0.71 0.178445
Target:  5'- gCGCUGCGcGCCCGGGgugUGCCCcuGGACGc -3'
miRNA:   3'- -GCGGCGCcCGGGCCC---GCGGG--UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 109880 0.69 0.235857
Target:  5'- gGcCCGCGGGC--GGGCGCCCcgGGGCu- -3'
miRNA:   3'- gC-GGCGCCCGggCCCGCGGG--UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 109766 0.66 0.34993
Target:  5'- cCGCCGCGucGCCgucuCGGGCGuCCCGGcCGc -3'
miRNA:   3'- -GCGGCGCc-CGG----GCCCGC-GGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 109046 0.68 0.282216
Target:  5'- aGCCGCGcGGCCgccaGGuaGCCCAG-CGg -3'
miRNA:   3'- gCGGCGC-CCGGg---CCcgCGGGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 108916 0.68 0.269986
Target:  5'- gGgCGCGGGgUCGGG-GCCCAGcACGc -3'
miRNA:   3'- gCgGCGCCCgGGCCCgCGGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 108748 0.71 0.158415
Target:  5'- gCGCCGCGGcGUCCGcGGCGCgCCGcgccacGGCAc -3'
miRNA:   3'- -GCGGCGCC-CGGGC-CCGCG-GGU------CUGUu -5'
23713 3' -67.7 NC_005261.1 + 108186 0.7 0.200692
Target:  5'- gGCCGCGGcUCCGGGCGCgagagcugcgCCAGcACGg -3'
miRNA:   3'- gCGGCGCCcGGGCCCGCG----------GGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 107366 0.72 0.140439
Target:  5'- uCGUCGUGGGCgCCgGGGCGCCCGcguccACGAa -3'
miRNA:   3'- -GCGGCGCCCG-GG-CCCGCGGGUc----UGUU- -5'
23713 3' -67.7 NC_005261.1 + 107261 0.7 0.191517
Target:  5'- gGCgCGCGGGCacgggCGGGCGCgcaUCAGGCGg -3'
miRNA:   3'- gCG-GCGCCCGg----GCCCGCG---GGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 105953 0.7 0.191517
Target:  5'- gCGCCGuCGauGGCCUcGGCGCCCAGcGCGg -3'
miRNA:   3'- -GCGGC-GC--CCGGGcCCGCGGGUC-UGUu -5'
23713 3' -67.7 NC_005261.1 + 105753 0.71 0.166172
Target:  5'- uCGCgCGCGGGgaCCUGGGUGCUCAGGg-- -3'
miRNA:   3'- -GCG-GCGCCC--GGGCCCGCGGGUCUguu -5'
23713 3' -67.7 NC_005261.1 + 105487 0.69 0.235857
Target:  5'- gGCgCGCGGGCCCcGaGCccGCCgAGACGAa -3'
miRNA:   3'- gCG-GCGCCCGGGcC-CG--CGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 105286 0.69 0.220191
Target:  5'- gCGCCgGCGaGCCCGGGCGCgCGaGCGc -3'
miRNA:   3'- -GCGG-CGCcCGGGCCCGCGgGUcUGUu -5'
23713 3' -67.7 NC_005261.1 + 104994 0.67 0.328462
Target:  5'- gCGCCcagcGCGGGCggcgguCgGGGCGCCaGGGCGGu -3'
miRNA:   3'- -GCGG----CGCCCG------GgCCCGCGGgUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 104893 0.7 0.196057
Target:  5'- cCGCCGCGuGcGCCCGGaCGCCCuccaGGGCc- -3'
miRNA:   3'- -GCGGCGC-C-CGGGCCcGCGGG----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 104677 0.66 0.380076
Target:  5'- uGCUGCGGcagcGCCUGGGCcaccGCCCcgaagagcggcuGGACGg -3'
miRNA:   3'- gCGGCGCC----CGGGCCCG----CGGG------------UCUGUu -5'
23713 3' -67.7 NC_005261.1 + 104180 0.69 0.235857
Target:  5'- cCGCgCGCGGGUcgUCGGGCgggacggcGUCCAGGCGc -3'
miRNA:   3'- -GCG-GCGCCCG--GGCCCG--------CGGGUCUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.