miRNA display CGI


Results 1 - 20 of 309 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 3' -67.7 NC_005261.1 + 70557 0.66 0.380076
Target:  5'- cCGCCGCaGGGCgCCGcGaagaGCUCGGGCGc -3'
miRNA:   3'- -GCGGCG-CCCG-GGCcCg---CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 10254 0.76 0.07762
Target:  5'- cCGCCGCGGGCCUGGcGCcuucuGCCCuGAgGAc -3'
miRNA:   3'- -GCGGCGCCCGGGCC-CG-----CGGGuCUgUU- -5'
23713 3' -67.7 NC_005261.1 + 34353 0.76 0.078404
Target:  5'- gGCCGaCGGGgCCGGGCGCCgcgcggcgccgcgcgCAGACGc -3'
miRNA:   3'- gCGGC-GCCCgGGCCCGCGG---------------GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 38915 0.75 0.085801
Target:  5'- gGCgCGCGGGCCCGcgcgccaagccGGCGgCCGGGCGGg -3'
miRNA:   3'- gCG-GCGCCCGGGC-----------CCGCgGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 129615 0.75 0.087971
Target:  5'- uCGCgGCGGGgUCGGGCGCCuuugCAGGCGg -3'
miRNA:   3'- -GCGgCGCCCgGGCCCGCGG----GUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 3343 0.75 0.092468
Target:  5'- gCGCCGCGGcGCCCGGcGCGCCggccuucaGGGCc- -3'
miRNA:   3'- -GCGGCGCC-CGGGCC-CGCGGg-------UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 16297 0.75 0.092468
Target:  5'- gCGCCGuCGGGCCCaGcGGCGgCCGGGCc- -3'
miRNA:   3'- -GCGGC-GCCCGGG-C-CCGCgGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 102948 0.74 0.097183
Target:  5'- cCGCUGCGgcggcGGCCgCGGGCGCCgCGGGCu- -3'
miRNA:   3'- -GCGGCGC-----CCGG-GCCCGCGG-GUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 49087 0.74 0.102125
Target:  5'- gCGCCGCGGGCCCGcugagcGCGCgCAG-CAGc -3'
miRNA:   3'- -GCGGCGCCCGGGCc-----CGCGgGUCuGUU- -5'
23713 3' -67.7 NC_005261.1 + 35929 0.76 0.075695
Target:  5'- gCGCCGCa-GCCCagcGGGCGCCCAGGCc- -3'
miRNA:   3'- -GCGGCGccCGGG---CCCGCGGGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 43796 0.76 0.075695
Target:  5'- gCGCCGCGGGUgaGGGgGCgCCGGGCGc -3'
miRNA:   3'- -GCGGCGCCCGggCCCgCG-GGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 12300 0.76 0.07019
Target:  5'- cCGCCGCGGGCaCGGGCGCgUAGcCGg -3'
miRNA:   3'- -GCGGCGCCCGgGCCCGCGgGUCuGUu -5'
23713 3' -67.7 NC_005261.1 + 71611 0.82 0.025908
Target:  5'- cCGCCGC-GGCCCGGGCgcggGCCCGGGCGg -3'
miRNA:   3'- -GCGGCGcCCGGGCCCG----CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 97405 0.8 0.033519
Target:  5'- uGCCGCGGGCUuggCGGGCGCgCCGGGCc- -3'
miRNA:   3'- gCGGCGCCCGG---GCCCGCG-GGUCUGuu -5'
23713 3' -67.7 NC_005261.1 + 65803 0.8 0.034392
Target:  5'- -uCCGCGGGUCgGGGUGCCCGGGCGg -3'
miRNA:   3'- gcGGCGCCCGGgCCCGCGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 53582 0.79 0.040115
Target:  5'- gGCCGCGGGCCgGcGGCGCCCcagcGGACc- -3'
miRNA:   3'- gCGGCGCCCGGgC-CCGCGGG----UCUGuu -5'
23713 3' -67.7 NC_005261.1 + 44295 0.78 0.04884
Target:  5'- aGCgGCGGGCCagggccgcugcccgCGGGCGCCgCAGACGGg -3'
miRNA:   3'- gCGgCGCCCGG--------------GCCCGCGG-GUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 15923 0.78 0.05449
Target:  5'- aGCCG-GGGCCgGGGCcgggGCCCGGGCAGg -3'
miRNA:   3'- gCGGCgCCCGGgCCCG----CGGGUCUGUU- -5'
23713 3' -67.7 NC_005261.1 + 78054 0.77 0.06016
Target:  5'- gGUCGCGGGCCCGGcccccgcGCcgGCCCAGGCGc -3'
miRNA:   3'- gCGGCGCCCGGGCC-------CG--CGGGUCUGUu -5'
23713 3' -67.7 NC_005261.1 + 79232 0.76 0.068442
Target:  5'- aG-CGCGGcGCCCGcGGCGCCCAGcACAAc -3'
miRNA:   3'- gCgGCGCC-CGGGC-CCGCGGGUC-UGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.