Results 41 - 60 of 309 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 44295 | 0.78 | 0.04884 |
Target: 5'- aGCgGCGGGCCagggccgcugcccgCGGGCGCCgCAGACGGg -3' miRNA: 3'- gCGgCGCCCGG--------------GCCCGCGG-GUCUGUU- -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 53582 | 0.79 | 0.040115 |
Target: 5'- gGCCGCGGGCCgGcGGCGCCCcagcGGACc- -3' miRNA: 3'- gCGGCGCCCGGgC-CCGCGGG----UCUGuu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 65803 | 0.8 | 0.034392 |
Target: 5'- -uCCGCGGGUCgGGGUGCCCGGGCGg -3' miRNA: 3'- gcGGCGCCCGGgCCCGCGGGUCUGUu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 97405 | 0.8 | 0.033519 |
Target: 5'- uGCCGCGGGCUuggCGGGCGCgCCGGGCc- -3' miRNA: 3'- gCGGCGCCCGG---GCCCGCG-GGUCUGuu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 71611 | 0.82 | 0.025908 |
Target: 5'- cCGCCGC-GGCCCGGGCgcggGCCCGGGCGg -3' miRNA: 3'- -GCGGCGcCCGGGCCCG----CGGGUCUGUu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 38915 | 0.75 | 0.085801 |
Target: 5'- gGCgCGCGGGCCCGcgcgccaagccGGCGgCCGGGCGGg -3' miRNA: 3'- gCG-GCGCCCGGGC-----------CCGCgGGUCUGUU- -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 129615 | 0.75 | 0.087971 |
Target: 5'- uCGCgGCGGGgUCGGGCGCCuuugCAGGCGg -3' miRNA: 3'- -GCGgCGCCCgGGCCCGCGG----GUCUGUu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 98581 | 0.73 | 0.118404 |
Target: 5'- -uCCGCGGGCUCGGGCGagUAGGCGg -3' miRNA: 3'- gcGGCGCCCGGGCCCGCggGUCUGUu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 113306 | 0.73 | 0.118404 |
Target: 5'- uGCCGCGGGCCUGG--GCCCGGcugcGCGAg -3' miRNA: 3'- gCGGCGCCCGGGCCcgCGGGUC----UGUU- -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 70815 | 0.73 | 0.115532 |
Target: 5'- gCGCCgGCGGcCCCGGGCGCgCCGGcGCGc -3' miRNA: 3'- -GCGG-CGCCcGGGCCCGCG-GGUC-UGUu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 89090 | 0.73 | 0.115532 |
Target: 5'- gGCUGC-GGCCCGGGCGCgCuGGCGc -3' miRNA: 3'- gCGGCGcCCGGGCCCGCGgGuCUGUu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 72430 | 0.74 | 0.109712 |
Target: 5'- uCGCCGCGcuuGCCCccggcggGGGCGCCCGcGGCGAg -3' miRNA: 3'- -GCGGCGCc--CGGG-------CCCGCGGGU-CUGUU- -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 29863 | 0.74 | 0.109172 |
Target: 5'- gGCCGCGcGGCgCCGGcgccgcugccgccaGCGCCCGGGCc- -3' miRNA: 3'- gCGGCGC-CCG-GGCC--------------CGCGGGUCUGuu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 97313 | 0.74 | 0.107302 |
Target: 5'- cCGuCCGCGGGgCCGGG-GCCCgauaGGGCAAa -3' miRNA: 3'- -GC-GGCGCCCgGGCCCgCGGG----UCUGUU- -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 71068 | 0.74 | 0.104683 |
Target: 5'- cCGCCGCGcGGCgggCgGGGCGUCCGGGCc- -3' miRNA: 3'- -GCGGCGC-CCG---GgCCCGCGGGUCUGuu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 11906 | 0.74 | 0.104683 |
Target: 5'- cCGCCGCGGGCCCGGccCGgCCGG-CGg -3' miRNA: 3'- -GCGGCGCCCGGGCCc-GCgGGUCuGUu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 49087 | 0.74 | 0.102125 |
Target: 5'- gCGCCGCGGGCCCGcugagcGCGCgCAG-CAGc -3' miRNA: 3'- -GCGGCGCCCGGGCc-----CGCGgGUCuGUU- -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 102948 | 0.74 | 0.097183 |
Target: 5'- cCGCUGCGgcggcGGCCgCGGGCGCCgCGGGCu- -3' miRNA: 3'- -GCGGCGC-----CCGG-GCCCGCGG-GUCUGuu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 16297 | 0.75 | 0.092468 |
Target: 5'- gCGCCGuCGGGCCCaGcGGCGgCCGGGCc- -3' miRNA: 3'- -GCGGC-GCCCGGG-C-CCGCgGGUCUGuu -5' |
|||||||
23713 | 3' | -67.7 | NC_005261.1 | + | 3343 | 0.75 | 0.092468 |
Target: 5'- gCGCCGCGGcGCCCGGcGCGCCggccuucaGGGCc- -3' miRNA: 3'- -GCGGCGCC-CGGGCC-CGCGGg-------UCUGuu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home