miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23713 5' -55.1 NC_005261.1 + 111794 0.66 0.92323
Target:  5'- ---cCCCUGGacgccUGGCUCGcGUCGGcCGAg -3'
miRNA:   3'- aaaaGGGACC-----AUCGGGCuCAGCU-GCU- -5'
23713 5' -55.1 NC_005261.1 + 117069 0.66 0.917529
Target:  5'- ----gCCUGGUuaAGCaCGAGcUCGGCGAg -3'
miRNA:   3'- aaaagGGACCA--UCGgGCUC-AGCUGCU- -5'
23713 5' -55.1 NC_005261.1 + 81225 0.66 0.90539
Target:  5'- ---aCCgUGGc-GCCCGAGggCGGCGGg -3'
miRNA:   3'- aaaaGGgACCauCGGGCUCa-GCUGCU- -5'
23713 5' -55.1 NC_005261.1 + 28713 0.66 0.90539
Target:  5'- ---aCCCgGGgGGCCCGGGggccUCGGCGc -3'
miRNA:   3'- aaaaGGGaCCaUCGGGCUC----AGCUGCu -5'
23713 5' -55.1 NC_005261.1 + 48767 0.66 0.898955
Target:  5'- ---cCCCgGGcGGCCCGAcgagcUCGGCGAu -3'
miRNA:   3'- aaaaGGGaCCaUCGGGCUc----AGCUGCU- -5'
23713 5' -55.1 NC_005261.1 + 55215 0.67 0.863266
Target:  5'- ---aUCC-GGcGGCCCGAGgCGGCGAg -3'
miRNA:   3'- aaaaGGGaCCaUCGGGCUCaGCUGCU- -5'
23713 5' -55.1 NC_005261.1 + 71619 0.68 0.822212
Target:  5'- ---gCCCgGGcgcgGGCCCGGG-CGGCGGg -3'
miRNA:   3'- aaaaGGGaCCa---UCGGGCUCaGCUGCU- -5'
23713 5' -55.1 NC_005261.1 + 4708 0.68 0.822212
Target:  5'- --gUCUUUGGcaucGGCCCcgGAGUCGGCGGc -3'
miRNA:   3'- aaaAGGGACCa---UCGGG--CUCAGCUGCU- -5'
23713 5' -55.1 NC_005261.1 + 128789 0.69 0.767164
Target:  5'- -gUUgUCUGGgcGCCCGGGcccgCGGCGGg -3'
miRNA:   3'- aaAAgGGACCauCGGGCUCa---GCUGCU- -5'
23713 5' -55.1 NC_005261.1 + 12743 0.69 0.767164
Target:  5'- ---cCCCUGGgcgGGCCCGgcgaGGUCGuagGCGGc -3'
miRNA:   3'- aaaaGGGACCa--UCGGGC----UCAGC---UGCU- -5'
23713 5' -55.1 NC_005261.1 + 90270 0.73 0.562846
Target:  5'- ---gUCCUGG-AGCCCGAGUCGGg-- -3'
miRNA:   3'- aaaaGGGACCaUCGGGCUCAGCUgcu -5'
23713 5' -55.1 NC_005261.1 + 14303 0.78 0.291158
Target:  5'- ---cCCCgaccGGUAGCCCGAGgagCGACGGc -3'
miRNA:   3'- aaaaGGGa---CCAUCGGGCUCa--GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.