miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 3' -57.4 NC_005261.1 + 23983 0.66 0.835684
Target:  5'- -cCGGG-CGGGcuagUCGCGGCggAGCGCUg -3'
miRNA:   3'- ucGCUCaGCCCa---AGCGUCG--UCGUGAg -5'
23714 3' -57.4 NC_005261.1 + 3830 0.66 0.835684
Target:  5'- cGCGGGccCGGGcgCuggcgGCAGCGGCGC-Cg -3'
miRNA:   3'- uCGCUCa-GCCCaaG-----CGUCGUCGUGaG- -5'
23714 3' -57.4 NC_005261.1 + 102293 0.66 0.835684
Target:  5'- cAGCGGccgCGGG-UCGUAGCcGCGCg- -3'
miRNA:   3'- -UCGCUca-GCCCaAGCGUCGuCGUGag -5'
23714 3' -57.4 NC_005261.1 + 108728 0.66 0.835684
Target:  5'- gAGCGcG-CGGGccaGCGGCGGCGC-Cg -3'
miRNA:   3'- -UCGCuCaGCCCaagCGUCGUCGUGaG- -5'
23714 3' -57.4 NC_005261.1 + 46777 0.66 0.835684
Target:  5'- gAGCGAGggcuugagcccCGGGcgcccgUCGCGGCGcGCGCg- -3'
miRNA:   3'- -UCGCUCa----------GCCCa-----AGCGUCGU-CGUGag -5'
23714 3' -57.4 NC_005261.1 + 64829 0.66 0.835684
Target:  5'- cGCGcGcCGGGUccgcgCGCuGCAGCGC-Ca -3'
miRNA:   3'- uCGCuCaGCCCAa----GCGuCGUCGUGaG- -5'
23714 3' -57.4 NC_005261.1 + 98849 0.66 0.835684
Target:  5'- cAGCGGGUCGccgcUUGCGGCGGCGa-- -3'
miRNA:   3'- -UCGCUCAGCcca-AGCGUCGUCGUgag -5'
23714 3' -57.4 NC_005261.1 + 19680 0.66 0.827282
Target:  5'- uGGCGuGGUCcaGGGUcCGCAGCaucauGGC-CUCa -3'
miRNA:   3'- -UCGC-UCAG--CCCAaGCGUCG-----UCGuGAG- -5'
23714 3' -57.4 NC_005261.1 + 25392 0.66 0.824726
Target:  5'- cGCGGGUCGGGggaggagagggugaGgGGCAGCuuUCu -3'
miRNA:   3'- uCGCUCAGCCCaag-----------CgUCGUCGugAG- -5'
23714 3' -57.4 NC_005261.1 + 49077 0.66 0.822154
Target:  5'- aAGCGGGcacgcgccgCGGGcccgcugagcgcgCGCAGCAGCucCUCg -3'
miRNA:   3'- -UCGCUCa--------GCCCaa-----------GCGUCGUCGu-GAG- -5'
23714 3' -57.4 NC_005261.1 + 19241 0.66 0.8187
Target:  5'- cGCGAGacugCGGGggCGCugaaCAGCGCg- -3'
miRNA:   3'- uCGCUCa---GCCCaaGCGuc--GUCGUGag -5'
23714 3' -57.4 NC_005261.1 + 240 0.66 0.8187
Target:  5'- cGCGAG-CGGGcccggcUGCGGCGGCGgCUg -3'
miRNA:   3'- uCGCUCaGCCCaa----GCGUCGUCGU-GAg -5'
23714 3' -57.4 NC_005261.1 + 19595 0.66 0.8187
Target:  5'- uGCGuGUgCaGGUccUCGCGGUAGCGCg- -3'
miRNA:   3'- uCGCuCA-GcCCA--AGCGUCGUCGUGag -5'
23714 3' -57.4 NC_005261.1 + 137923 0.66 0.8187
Target:  5'- cGCGAG-CGGGcccggcUGCGGCGGCGgCUg -3'
miRNA:   3'- uCGCUCaGCCCaa----GCGUCGUCGU-GAg -5'
23714 3' -57.4 NC_005261.1 + 107265 0.66 0.817833
Target:  5'- cGCGGGcacgggCGGGcgCGCaucaggcGGCAGgCACUCc -3'
miRNA:   3'- uCGCUCa-----GCCCaaGCG-------UCGUC-GUGAG- -5'
23714 3' -57.4 NC_005261.1 + 87476 0.66 0.816092
Target:  5'- cGCGcGUCaGGUucggCGCGGCcgugcuggcgcgcaGGCGCUCg -3'
miRNA:   3'- uCGCuCAGcCCAa---GCGUCG--------------UCGUGAG- -5'
23714 3' -57.4 NC_005261.1 + 13099 0.66 0.809947
Target:  5'- cGGCGGGcucggcUCGGGggCGuCGGCGGcCGCg- -3'
miRNA:   3'- -UCGCUC------AGCCCaaGC-GUCGUC-GUGag -5'
23714 3' -57.4 NC_005261.1 + 118399 0.66 0.809947
Target:  5'- uGGCGGccgCGGGcgcCGCAGCcGCGCUg -3'
miRNA:   3'- -UCGCUca-GCCCaa-GCGUCGuCGUGAg -5'
23714 3' -57.4 NC_005261.1 + 104196 0.66 0.809947
Target:  5'- gGGCGGGaCGGcGUccaggcgcUCGCGcGCGGCGCg- -3'
miRNA:   3'- -UCGCUCaGCC-CA--------AGCGU-CGUCGUGag -5'
23714 3' -57.4 NC_005261.1 + 33502 0.66 0.809947
Target:  5'- cGCGAGcaccaGGGgcgGCGGCGGCAC-Cg -3'
miRNA:   3'- uCGCUCag---CCCaagCGUCGUCGUGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.