miRNA display CGI


Results 1 - 20 of 94 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 3' -57.4 NC_005261.1 + 240 0.66 0.8187
Target:  5'- cGCGAG-CGGGcccggcUGCGGCGGCGgCUg -3'
miRNA:   3'- uCGCUCaGCCCaa----GCGUCGUCGU-GAg -5'
23714 3' -57.4 NC_005261.1 + 2179 0.71 0.511691
Target:  5'- uGCGAGUCGGcGcUCaGCAGCAGC-Cg- -3'
miRNA:   3'- uCGCUCAGCC-CaAG-CGUCGUCGuGag -5'
23714 3' -57.4 NC_005261.1 + 2399 0.67 0.763904
Target:  5'- cGGCGAGcgcgcccgCGGGccccgCGCGGCGGCGggccgcgauCUCg -3'
miRNA:   3'- -UCGCUCa-------GCCCaa---GCGUCGUCGU---------GAG- -5'
23714 3' -57.4 NC_005261.1 + 3830 0.66 0.835684
Target:  5'- cGCGGGccCGGGcgCuggcgGCAGCGGCGC-Cg -3'
miRNA:   3'- uCGCUCa-GCCCaaG-----CGUCGUCGUGaG- -5'
23714 3' -57.4 NC_005261.1 + 5548 0.67 0.754304
Target:  5'- cAGCGAGaCGGGgggCGCccgAGCGGCGg-- -3'
miRNA:   3'- -UCGCUCaGCCCaa-GCG---UCGUCGUgag -5'
23714 3' -57.4 NC_005261.1 + 13099 0.66 0.809947
Target:  5'- cGGCGGGcucggcUCGGGggCGuCGGCGGcCGCg- -3'
miRNA:   3'- -UCGCUC------AGCCCaaGC-GUCGUC-GUGag -5'
23714 3' -57.4 NC_005261.1 + 15051 0.73 0.43614
Target:  5'- gGGgGGGUCGGGgUCGCGGCGGgG-UCg -3'
miRNA:   3'- -UCgCUCAGCCCaAGCGUCGUCgUgAG- -5'
23714 3' -57.4 NC_005261.1 + 17712 0.7 0.602377
Target:  5'- -cCGAGUCGGuUgcccgggaaUCGgAGCGGCGCUCg -3'
miRNA:   3'- ucGCUCAGCCcA---------AGCgUCGUCGUGAG- -5'
23714 3' -57.4 NC_005261.1 + 19241 0.66 0.8187
Target:  5'- cGCGAGacugCGGGggCGCugaaCAGCGCg- -3'
miRNA:   3'- uCGCUCa---GCCCaaGCGuc--GUCGUGag -5'
23714 3' -57.4 NC_005261.1 + 19595 0.66 0.8187
Target:  5'- uGCGuGUgCaGGUccUCGCGGUAGCGCg- -3'
miRNA:   3'- uCGCuCA-GcCCA--AGCGUCGUCGUGag -5'
23714 3' -57.4 NC_005261.1 + 19680 0.66 0.827282
Target:  5'- uGGCGuGGUCcaGGGUcCGCAGCaucauGGC-CUCa -3'
miRNA:   3'- -UCGC-UCAG--CCCAaGCGUCG-----UCGuGAG- -5'
23714 3' -57.4 NC_005261.1 + 20119 0.68 0.724884
Target:  5'- aGGCGcG-CGGGccCGCAGCggcuccgcgAGCGCUCa -3'
miRNA:   3'- -UCGCuCaGCCCaaGCGUCG---------UCGUGAG- -5'
23714 3' -57.4 NC_005261.1 + 20559 0.7 0.571705
Target:  5'- uGGCG-G-CGGGcugCGCAGCGGCGC-Cg -3'
miRNA:   3'- -UCGCuCaGCCCaa-GCGUCGUCGUGaG- -5'
23714 3' -57.4 NC_005261.1 + 21839 0.69 0.622949
Target:  5'- uGCGGG-CGGGcUCGCcccGCAGCugacGCUCg -3'
miRNA:   3'- uCGCUCaGCCCaAGCGu--CGUCG----UGAG- -5'
23714 3' -57.4 NC_005261.1 + 22734 0.69 0.633249
Target:  5'- cAGCGccAGUCGGGcgCGgGGCGGCGg-- -3'
miRNA:   3'- -UCGC--UCAGCCCaaGCgUCGUCGUgag -5'
23714 3' -57.4 NC_005261.1 + 22787 0.69 0.663085
Target:  5'- cGCGAGaaGGGgguugUCGCggccggcGGCGGCGCUg -3'
miRNA:   3'- uCGCUCagCCCa----AGCG-------UCGUCGUGAg -5'
23714 3' -57.4 NC_005261.1 + 23191 0.7 0.592121
Target:  5'- cAGCGAGcgcgccgCGGGgccCGCAGCGGCGg-- -3'
miRNA:   3'- -UCGCUCa------GCCCaa-GCGUCGUCGUgag -5'
23714 3' -57.4 NC_005261.1 + 23242 0.68 0.714903
Target:  5'- cAGCGGGccggccugcUCGGGcgagagcUGCAGCAGCGcCUCc -3'
miRNA:   3'- -UCGCUC---------AGCCCaa-----GCGUCGUCGU-GAG- -5'
23714 3' -57.4 NC_005261.1 + 23945 0.67 0.754304
Target:  5'- cGGCGGGuUCGGGgUCGuCGGCAcGCGgUUc -3'
miRNA:   3'- -UCGCUC-AGCCCaAGC-GUCGU-CGUgAG- -5'
23714 3' -57.4 NC_005261.1 + 23983 0.66 0.835684
Target:  5'- -cCGGG-CGGGcuagUCGCGGCggAGCGCUg -3'
miRNA:   3'- ucGCUCaGCCCa---AGCGUCG--UCGUGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.