miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 44223 0.66 0.51905
Target:  5'- cGGGAGcgcgcGCUGCUggCCGCCcagcgcgcggccgacGCCGCGgcgCGc -3'
miRNA:   3'- -UCCUC-----CGACGGa-GGCGG---------------CGGCGCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 100975 0.66 0.507013
Target:  5'- uGGaAGGCgcccagcgcgucgccGCgCUCCGCCaGCCGCG-CGu -3'
miRNA:   3'- uCC-UCCGa--------------CG-GAGGCGG-CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 1312 0.66 0.506091
Target:  5'- cGGcGGCggcacGCgCUCCgggacGCCGCCGCGcCGc -3'
miRNA:   3'- uCCuCCGa----CG-GAGG-----CGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 4953 0.66 0.506091
Target:  5'- cGGcccAGGC-GCCcCCgGCCGCgGCGUCc -3'
miRNA:   3'- uCC---UCCGaCGGaGG-CGGCGgCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 30702 0.66 0.506091
Target:  5'- gGGGAGGCccgcgggaGCC-CCGgCGCCGgGcCGc -3'
miRNA:   3'- -UCCUCCGa-------CGGaGGCgGCGGCgCaGC- -5'
23714 5' -64.7 NC_005261.1 + 63042 0.66 0.506091
Target:  5'- cGGcGAGGCgGUCg-CGCagcagCGCCGCGUCGc -3'
miRNA:   3'- -UC-CUCCGaCGGagGCG-----GCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 116529 0.66 0.506091
Target:  5'- -cGAGGCccGCCgcUCCGCgccCGCgCGCGUCa -3'
miRNA:   3'- ucCUCCGa-CGG--AGGCG---GCG-GCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 106256 0.66 0.496921
Target:  5'- --cGGGCcGCCgCCGCCGCUGcCGcCGg -3'
miRNA:   3'- uccUCCGaCGGaGGCGGCGGC-GCaGC- -5'
23714 5' -64.7 NC_005261.1 + 130562 0.66 0.496921
Target:  5'- uGGGcGGCccGCCgggcggaagCGCCGCCGCG-CGg -3'
miRNA:   3'- -UCCuCCGa-CGGag-------GCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 5128 0.66 0.496921
Target:  5'- cGGGcggcccgccGGCgcucgcgcGCCUCgGCCcggcggGCCGCGUCGa -3'
miRNA:   3'- uCCU---------CCGa-------CGGAGgCGG------CGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 12781 0.66 0.496921
Target:  5'- cGGGGGGCUcGUCggcgagCuCGUCGUCgGCGUCGc -3'
miRNA:   3'- -UCCUCCGA-CGGa-----G-GCGGCGG-CGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 28873 0.66 0.496921
Target:  5'- -uGAGGCUGCggcgcggacgCCGCCGCCuGCGcCc -3'
miRNA:   3'- ucCUCCGACGga--------GGCGGCGG-CGCaGc -5'
23714 5' -64.7 NC_005261.1 + 39793 0.66 0.496921
Target:  5'- cGGGGGGCgGCg-CgGCCGCCgGCGcCa -3'
miRNA:   3'- -UCCUCCGaCGgaGgCGGCGG-CGCaGc -5'
23714 5' -64.7 NC_005261.1 + 125573 0.66 0.496921
Target:  5'- aGGGAGGCcucGCaaaCGCCacgcGCCGgGUCGa -3'
miRNA:   3'- -UCCUCCGa--CGgagGCGG----CGGCgCAGC- -5'
23714 5' -64.7 NC_005261.1 + 95013 0.66 0.487825
Target:  5'- gGGGcGGGCUauaaaGCCgCCGCCGgCgGCGcUCGg -3'
miRNA:   3'- -UCC-UCCGA-----CGGaGGCGGC-GgCGC-AGC- -5'
23714 5' -64.7 NC_005261.1 + 51320 0.66 0.487825
Target:  5'- ---cGGC-GCCgCCGCCGCCuuCGUCGg -3'
miRNA:   3'- uccuCCGaCGGaGGCGGCGGc-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 55800 0.66 0.487825
Target:  5'- cGGcGcGCgGCCUUCGCCGCCGUa--- -3'
miRNA:   3'- uCCuC-CGaCGGAGGCGGCGGCGcagc -5'
23714 5' -64.7 NC_005261.1 + 72955 0.66 0.487825
Target:  5'- cGGcaccGGCUcGCgC-CCGCCGCCGCGg-- -3'
miRNA:   3'- uCCu---CCGA-CG-GaGGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 67480 0.66 0.487825
Target:  5'- cAGGAaGCccgcgGCCgCCGCCaGCCGCG-CGu -3'
miRNA:   3'- -UCCUcCGa----CGGaGGCGG-CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 103222 0.66 0.487825
Target:  5'- cAGGAaGCgcgcgcaGuCCUCCGCCGuCCGCG-CGc -3'
miRNA:   3'- -UCCUcCGa------C-GGAGGCGGC-GGCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.