miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 90770 0.67 0.426553
Target:  5'- -cGAGGCcGCCgaggCCGCUGCgGCGgcCGg -3'
miRNA:   3'- ucCUCCGaCGGa---GGCGGCGgCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 60410 0.67 0.426553
Target:  5'- cGGGccGGCccggGCCcggggCCGCCGCgcuCGCGUCGc -3'
miRNA:   3'- uCCU--CCGa---CGGa----GGCGGCG---GCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 134004 0.67 0.426553
Target:  5'- cGGcGGCUacacCCUcaacuacgCCGCCGCCGCGcUCGc -3'
miRNA:   3'- uCCuCCGAc---GGA--------GGCGGCGGCGC-AGC- -5'
23714 5' -64.7 NC_005261.1 + 98764 0.67 0.426553
Target:  5'- ---cGGUUGCCgcugCCGCCGCCGgcCGcCGg -3'
miRNA:   3'- uccuCCGACGGa---GGCGGCGGC--GCaGC- -5'
23714 5' -64.7 NC_005261.1 + 63141 0.67 0.426553
Target:  5'- cGGGGGGCUGCUUgaaCUGCagcuCCGUGUCc -3'
miRNA:   3'- -UCCUCCGACGGA---GGCGgc--GGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 11830 0.67 0.426553
Target:  5'- uGGGGGCggggGCC-CCGCgGgCGCG-CGu -3'
miRNA:   3'- uCCUCCGa---CGGaGGCGgCgGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 6245 0.67 0.426553
Target:  5'- gGGGAGG--GCCUgcCCGCC-CCGCGgggCGg -3'
miRNA:   3'- -UCCUCCgaCGGA--GGCGGcGGCGCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 112973 0.67 0.435029
Target:  5'- cGGcGGCcGCCaCCGCCGCCaucuuCGUCa -3'
miRNA:   3'- uCCuCCGaCGGaGGCGGCGGc----GCAGc -5'
23714 5' -64.7 NC_005261.1 + 118582 0.67 0.435029
Target:  5'- cGGcGGC-GCgCgCCGCCGCCGCGg-- -3'
miRNA:   3'- uCCuCCGaCG-GaGGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 124891 0.67 0.461028
Target:  5'- cGGGuuccuGGCcGCCcCCGCCGCCaCG-CGg -3'
miRNA:   3'- -UCCu----CCGaCGGaGGCGGCGGcGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 106863 0.67 0.461028
Target:  5'- uGGGGGGCggGCgUCCGCgGCCuCG-Ca -3'
miRNA:   3'- -UCCUCCGa-CGgAGGCGgCGGcGCaGc -5'
23714 5' -64.7 NC_005261.1 + 107798 0.67 0.460148
Target:  5'- uAGGAgggccucgcgcgcGGCgGCCcuagcggCCGCCGCCGCcUCu -3'
miRNA:   3'- -UCCU-------------CCGaCGGa------GGCGGCGGCGcAGc -5'
23714 5' -64.7 NC_005261.1 + 97102 0.67 0.452269
Target:  5'- cGGGGGCgccaGCCgggCCGCggccggaggCGCCGCGg-- -3'
miRNA:   3'- uCCUCCGa---CGGa--GGCG---------GCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 49502 0.67 0.451398
Target:  5'- gAGGAGGCcggUGaCCUCCgaaaaggucgcggGCCaGCCGcCGUCc -3'
miRNA:   3'- -UCCUCCG---AC-GGAGG-------------CGG-CGGC-GCAGc -5'
23714 5' -64.7 NC_005261.1 + 132343 0.67 0.443602
Target:  5'- cGGGGccaugcGCaGCUUCCGCCGCgGCG-CGc -3'
miRNA:   3'- uCCUC------CGaCGGAGGCGGCGgCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 33966 0.67 0.443602
Target:  5'- uGGAccuuCUGCCgccgCCGCCGCCGCccCGg -3'
miRNA:   3'- uCCUcc--GACGGa---GGCGGCGGCGcaGC- -5'
23714 5' -64.7 NC_005261.1 + 43832 0.67 0.44102
Target:  5'- uGGAGaaGCUGCUcggcgagggcgaggaCGCgGCCGCGUCGu -3'
miRNA:   3'- uCCUC--CGACGGag-------------GCGgCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 75583 0.67 0.435029
Target:  5'- cGGcGGCgcgGCgCUCgCGCgCGCCGCGgacgCGg -3'
miRNA:   3'- uCCuCCGa--CG-GAG-GCG-GCGGCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 48804 0.67 0.435029
Target:  5'- cGuGAGGCcgugcgcgGCgUCCGCgaCGCCGuCGUCGg -3'
miRNA:   3'- uC-CUCCGa-------CGgAGGCG--GCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 17176 0.67 0.435029
Target:  5'- cGGGcguGGGCaGCC-CUGCCGCgGCGgCGa -3'
miRNA:   3'- -UCC---UCCGaCGGaGGCGGCGgCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.