Results 61 - 80 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23714 | 5' | -64.7 | NC_005261.1 | + | 112973 | 0.67 | 0.435029 |
Target: 5'- cGGcGGCcGCCaCCGCCGCCaucuuCGUCa -3' miRNA: 3'- uCCuCCGaCGGaGGCGGCGGc----GCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 118582 | 0.67 | 0.435029 |
Target: 5'- cGGcGGC-GCgCgCCGCCGCCGCGg-- -3' miRNA: 3'- uCCuCCGaCG-GaGGCGGCGGCGCagc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 17176 | 0.67 | 0.435029 |
Target: 5'- cGGGcguGGGCaGCC-CUGCCGCgGCGgCGa -3' miRNA: 3'- -UCC---UCCGaCGGaGGCGGCGgCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 48804 | 0.67 | 0.435029 |
Target: 5'- cGuGAGGCcgugcgcgGCgUCCGCgaCGCCGuCGUCGg -3' miRNA: 3'- uC-CUCCGa-------CGgAGGCG--GCGGC-GCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 75583 | 0.67 | 0.435029 |
Target: 5'- cGGcGGCgcgGCgCUCgCGCgCGCCGCGgacgCGg -3' miRNA: 3'- uCCuCCGa--CG-GAG-GCG-GCGGCGCa---GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 43832 | 0.67 | 0.44102 |
Target: 5'- uGGAGaaGCUGCUcggcgagggcgaggaCGCgGCCGCGUCGu -3' miRNA: 3'- uCCUC--CGACGGag-------------GCGgCGGCGCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 62666 | 0.68 | 0.401725 |
Target: 5'- aAGGAGGCcagcGCCacgUCCGCCagcuGCaCGCGcCGg -3' miRNA: 3'- -UCCUCCGa---CGG---AGGCGG----CG-GCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 29969 | 0.68 | 0.401725 |
Target: 5'- -aGAGGCgGCgCggugcgCCGCCGgCGCGUCc -3' miRNA: 3'- ucCUCCGaCG-Ga-----GGCGGCgGCGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 21761 | 0.68 | 0.401725 |
Target: 5'- uGGAGcGCgcGCCgggcgagCCGCCGCgGCG-CGg -3' miRNA: 3'- uCCUC-CGa-CGGa------GGCGGCGgCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 110296 | 0.68 | 0.401725 |
Target: 5'- uGGcGGGC-GCCUgCGCCGCCGaGUaCGg -3' miRNA: 3'- uCC-UCCGaCGGAgGCGGCGGCgCA-GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 127207 | 0.68 | 0.393656 |
Target: 5'- cGGAacagcGGCgcgcgGCUUaaGCCGCgCGCGUCGa -3' miRNA: 3'- uCCU-----CCGa----CGGAggCGGCG-GCGCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 14705 | 0.68 | 0.385692 |
Target: 5'- gGGGGGGC-GCCUUCgGCCGagauuccaGCGUCa -3' miRNA: 3'- -UCCUCCGaCGGAGG-CGGCgg------CGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 83056 | 0.68 | 0.401725 |
Target: 5'- gAGGGGGCUcCCUgCgCGCCcCCGCGgCGg -3' miRNA: 3'- -UCCUCCGAcGGA-G-GCGGcGGCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 129578 | 0.68 | 0.401725 |
Target: 5'- gAGGAGGCgGCCg-CG-CGCCGCGggacacgCGg -3' miRNA: 3'- -UCCUCCGaCGGagGCgGCGGCGCa------GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 109807 | 0.68 | 0.401725 |
Target: 5'- cGGccGGCgccGCUUCCGCCGCgGCGg-- -3' miRNA: 3'- uCCu-CCGa--CGGAGGCGGCGgCGCagc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 37838 | 0.68 | 0.409899 |
Target: 5'- uGGA-GC-GCCUUCGCCGCCGaCuUCGg -3' miRNA: 3'- uCCUcCGaCGGAGGCGGCGGC-GcAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 101235 | 0.68 | 0.409899 |
Target: 5'- gAGGuGGC-GCCUCaGCuCGCgcagCGCGUCGa -3' miRNA: 3'- -UCCuCCGaCGGAGgCG-GCG----GCGCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 25283 | 0.68 | 0.409899 |
Target: 5'- gAGGGGGCgcgGUCUgUgGCCGUgaGCGUCGu -3' miRNA: 3'- -UCCUCCGa--CGGA-GgCGGCGg-CGCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 95762 | 0.68 | 0.409899 |
Target: 5'- cGGGGGCgccgggaGCCU-CGCgCGCUGCGcCGg -3' miRNA: 3'- uCCUCCGa------CGGAgGCG-GCGGCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 131854 | 0.68 | 0.385692 |
Target: 5'- cGGGGuguccaagcGGCUGCUUgagcuggcggCCGCCGCCGCacgCGa -3' miRNA: 3'- -UCCU---------CCGACGGA----------GGCGGCGGCGca-GC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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