miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 31279 0.72 0.21738
Target:  5'- -cGAGGCgcugGCCgagaucgcggcCCGCCGCCGCG-CGg -3'
miRNA:   3'- ucCUCCGa---CGGa----------GGCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 49958 0.72 0.227722
Target:  5'- aAGGAGGCggcGCCgucgucauccCCGgCGCCGcCGUCGu -3'
miRNA:   3'- -UCCUCCGa--CGGa---------GGCgGCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 105165 0.72 0.202621
Target:  5'- gAGGGcGGCguccacgggGCCcgCCGCCGCCGCGg-- -3'
miRNA:   3'- -UCCU-CCGa--------CGGa-GGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 99472 0.72 0.21536
Target:  5'- cGGcGGCgcuggccgcugcgGCCagCGCCGCCGCGUCc -3'
miRNA:   3'- uCCuCCGa------------CGGagGCGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 30948 0.72 0.207441
Target:  5'- cGGGGGCggGCCUCgagGcCCGCCGCGaCGg -3'
miRNA:   3'- uCCUCCGa-CGGAGg--C-GGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 49241 0.72 0.207441
Target:  5'- cAGGucGGCcGCCgCCGCgGCgGCGUCGg -3'
miRNA:   3'- -UCCu-CCGaCGGaGGCGgCGgCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 536 0.72 0.21738
Target:  5'- cGGGGGGCaggGCggacggcggCUCgGCCGCCGCG-CGg -3'
miRNA:   3'- -UCCUCCGa--CG---------GAGgCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 22810 0.72 0.21738
Target:  5'- cGGcGGCgGCgCUgCCGCCGCCGcCGUUGg -3'
miRNA:   3'- uCCuCCGaCG-GA-GGCGGCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 103967 0.72 0.223017
Target:  5'- cGGcGGCcGCCacacggaagcgcucgCCGCCGCCGCgGUCGg -3'
miRNA:   3'- uCCuCCGaCGGa--------------GGCGGCGGCG-CAGC- -5'
23714 5' -64.7 NC_005261.1 + 98309 0.71 0.238478
Target:  5'- cGGGGGCggGCg-CCGCCGCCaGCGgCGg -3'
miRNA:   3'- uCCUCCGa-CGgaGGCGGCGG-CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 100381 0.71 0.238478
Target:  5'- -cGAGGCcGCCUCCaccacGCCGCCGuUGUCc -3'
miRNA:   3'- ucCUCCGaCGGAGG-----CGGCGGC-GCAGc -5'
23714 5' -64.7 NC_005261.1 + 100075 0.71 0.255405
Target:  5'- cGGGGGCgcGCCgcgccccucgCCGCCGCCGCuGcCGc -3'
miRNA:   3'- uCCUCCGa-CGGa---------GGCGGCGGCG-CaGC- -5'
23714 5' -64.7 NC_005261.1 + 104565 0.71 0.265427
Target:  5'- cAGGucgcccagcgcugaGGGCUgcgcgcgcaucGCCUCCGCCaGCCGCG-CGu -3'
miRNA:   3'- -UCC--------------UCCGA-----------CGGAGGCGG-CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 103561 0.71 0.267228
Target:  5'- cAGG-GGCcccgUGCCgCCGCCGCCcGCGcCGu -3'
miRNA:   3'- -UCCuCCG----ACGGaGGCGGCGG-CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 128518 0.71 0.260671
Target:  5'- cGGAGGCaGCCUCCuggcggcuggaguGCUGCUGCGa-- -3'
miRNA:   3'- uCCUCCGaCGGAGG-------------CGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 68761 0.71 0.255405
Target:  5'- -cGGGGC-GCCgcggaGCCGCCGUGUCGa -3'
miRNA:   3'- ucCUCCGaCGGagg--CGGCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 44274 0.71 0.261262
Target:  5'- gGGGGGGCggGgC-CCGCCGCCaGCGgCGg -3'
miRNA:   3'- -UCCUCCGa-CgGaGGCGGCGG-CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 13646 0.71 0.267228
Target:  5'- cGGAaGCgcgcGCCgugCCGCCGCCGCGg-- -3'
miRNA:   3'- uCCUcCGa---CGGa--GGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 12324 0.71 0.244014
Target:  5'- cGGcGGGCgcgcgcuugGCCggcgcggCCGCCGCCGCGgCGg -3'
miRNA:   3'- uCC-UCCGa--------CGGa------GGCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 33378 0.71 0.261262
Target:  5'- cGGGcugcGGGCcGCCgcagCCGCCGCCGCa--- -3'
miRNA:   3'- -UCC----UCCGaCGGa---GGCGGCGGCGcagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.