Results 41 - 60 of 169 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23714 | 5' | -64.7 | NC_005261.1 | + | 97498 | 0.71 | 0.263635 |
Target: 5'- uGGGGGC-GCCggggCCGCCggaacguuucggcucGCCGCGaUCGg -3' miRNA: 3'- uCCUCCGaCGGa---GGCGG---------------CGGCGC-AGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 103561 | 0.71 | 0.267228 |
Target: 5'- cAGG-GGCcccgUGCCgCCGCCGCCcGCGcCGu -3' miRNA: 3'- -UCCuCCG----ACGGaGGCGGCGG-CGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 28809 | 0.7 | 0.273304 |
Target: 5'- cGGAGGCaGCCgCCGCCgaagccgaggcgGCCGCGgcugaggCGg -3' miRNA: 3'- uCCUCCGaCGGaGGCGG------------CGGCGCa------GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 135348 | 0.7 | 0.285787 |
Target: 5'- cGGAgcGGUUcGCCcCCgaggGCCGCCGCGUCa -3' miRNA: 3'- uCCU--CCGA-CGGaGG----CGGCGGCGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 30540 | 0.7 | 0.285787 |
Target: 5'- gAGGAGGaCgaggaagagGCCgCCGCCGCCGgGgccUCGg -3' miRNA: 3'- -UCCUCC-Ga--------CGGaGGCGGCGGCgC---AGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 58717 | 0.7 | 0.27949 |
Target: 5'- -aGAGGUgcGCCaCCGCCGCCGCG-Ca -3' miRNA: 3'- ucCUCCGa-CGGaGGCGGCGGCGCaGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 53134 | 0.7 | 0.27949 |
Target: 5'- cAGGGcGGCguacgcgcgcGCCgUCgCGCCGCCGuCGUCGg -3' miRNA: 3'- -UCCU-CCGa---------CGG-AG-GCGGCGGC-GCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 12127 | 0.7 | 0.27949 |
Target: 5'- cAGGAuGGC-GCCcgCCGCCGCgGCGgccgCGc -3' miRNA: 3'- -UCCU-CCGaCGGa-GGCGGCGgCGCa---GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 99856 | 0.7 | 0.273304 |
Target: 5'- cGGcaccGGCcGCCgcgcgCCGCCGCCGC-UCGg -3' miRNA: 3'- uCCu---CCGaCGGa----GGCGGCGGCGcAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 29038 | 0.7 | 0.273304 |
Target: 5'- gGGGAugacacGGggGCCgCCGCCGCCGCGgcCGa -3' miRNA: 3'- -UCCU------CCgaCGGaGGCGGCGGCGCa-GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 124221 | 0.7 | 0.292196 |
Target: 5'- -cGuGGCUGCCagcagcccaaCCGCCGCCGCGg-- -3' miRNA: 3'- ucCuCCGACGGa---------GGCGGCGGCGCagc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 58523 | 0.7 | 0.298716 |
Target: 5'- cAGGAGGCggaucgaGCCcagCCGCCGCCcgggcuccugcGcCGUCGu -3' miRNA: 3'- -UCCUCCGa------CGGa--GGCGGCGG-----------C-GCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 121805 | 0.7 | 0.312093 |
Target: 5'- cAGGGGGCgcguggcugGgCUCUgcggGCCGCCGCGgCGg -3' miRNA: 3'- -UCCUCCGa--------CgGAGG----CGGCGGCGCaGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 97842 | 0.7 | 0.312093 |
Target: 5'- cGGGGGCgGCgggCGCCGCCGCGgcagCGc -3' miRNA: 3'- uCCUCCGaCGgagGCGGCGGCGCa---GC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 106327 | 0.7 | 0.305348 |
Target: 5'- cGuGAGcCacgGCC-CCGCCGCCGCGUCc -3' miRNA: 3'- uC-CUCcGa--CGGaGGCGGCGGCGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 33071 | 0.7 | 0.305348 |
Target: 5'- gGGGAcgcGGCgcugGCggCCGCCGCCacauccccuGCGUCGg -3' miRNA: 3'- -UCCU---CCGa---CGgaGGCGGCGG---------CGCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 128710 | 0.7 | 0.305348 |
Target: 5'- cGGGAGGCgcgcccggGCCccgcCCGcCCGCCGagcuGUCGg -3' miRNA: 3'- -UCCUCCGa-------CGGa---GGC-GGCGGCg---CAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 120311 | 0.7 | 0.298716 |
Target: 5'- cGGcGAGGCUGUCUgCGaggcgCGCUGCGUCc -3' miRNA: 3'- -UC-CUCCGACGGAgGCg----GCGGCGCAGc -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 109165 | 0.7 | 0.273304 |
Target: 5'- cAGGccGGGCagGuUCUCCGCuagcagCGCCGCGUCGg -3' miRNA: 3'- -UCC--UCCGa-C-GGAGGCG------GCGGCGCAGC- -5' |
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23714 | 5' | -64.7 | NC_005261.1 | + | 54785 | 0.69 | 0.32592 |
Target: 5'- cAGGAcGGCgcGCC-CCGCCGCCuccGCGUa- -3' miRNA: 3'- -UCCU-CCGa-CGGaGGCGGCGG---CGCAgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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