miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 43415 0.83 0.0359
Target:  5'- cGGGGGCgGCCUCCGCCGCCgGCGg-- -3'
miRNA:   3'- uCCUCCGaCGGAGGCGGCGG-CGCagc -5'
23714 5' -64.7 NC_005261.1 + 88325 0.8 0.056694
Target:  5'- gGGGAGGCUgcaaggcuggcggcGCC-CCGCCGCCGCGgCGu -3'
miRNA:   3'- -UCCUCCGA--------------CGGaGGCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 4914 0.8 0.058617
Target:  5'- cGGcGGCUGCCUCCGCCgcgGCCGCGa-- -3'
miRNA:   3'- uCCuCCGACGGAGGCGG---CGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 28267 0.8 0.063297
Target:  5'- gGGGGGGC-GCUguugCCGCCGCCGCGgccgCGg -3'
miRNA:   3'- -UCCUCCGaCGGa---GGCGGCGGCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 32294 0.8 0.064936
Target:  5'- uGGAGGCgggcGCCgcccccgCCGCCGCCGCGgccgCGg -3'
miRNA:   3'- uCCUCCGa---CGGa------GGCGGCGGCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 60227 0.76 0.11037
Target:  5'- gGGGcgcccccaGGGCcGCCUCCGCCGCgGCGggagCGg -3'
miRNA:   3'- -UCC--------UCCGaCGGAGGCGGCGgCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 47621 0.76 0.113152
Target:  5'- cGGGGGCgGCCgCgGCCGCCGCG-CGc -3'
miRNA:   3'- uCCUCCGaCGGaGgCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 7620 0.75 0.137872
Target:  5'- uGGAucugccucuGCUGCCgCCGCUGCCGCGUCu -3'
miRNA:   3'- uCCUc--------CGACGGaGGCGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 111304 0.74 0.148361
Target:  5'- -cGccGCUGCCUCCGCCGCCGCcgcgcgcUCGg -3'
miRNA:   3'- ucCucCGACGGAGGCGGCGGCGc------AGC- -5'
23714 5' -64.7 NC_005261.1 + 82990 0.74 0.152015
Target:  5'- cGGAGGCggccGCCUCgCGCaccgaGCCGcCGUCGc -3'
miRNA:   3'- uCCUCCGa---CGGAG-GCGg----CGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 84364 0.74 0.15957
Target:  5'- aAGGcgccgcccgcGGGCUcgGCCUCgGCCGCCGCcUCGa -3'
miRNA:   3'- -UCC----------UCCGA--CGGAGgCGGCGGCGcAGC- -5'
23714 5' -64.7 NC_005261.1 + 106031 0.74 0.161122
Target:  5'- cGGAGGCacGCCaCCGCgcugcccggcccuagCGCCGCGUCGu -3'
miRNA:   3'- uCCUCCGa-CGGaGGCG---------------GCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 59472 0.74 0.167463
Target:  5'- cGGGGGGCagcGCCggcgCgGCCGCCGCGcCa -3'
miRNA:   3'- -UCCUCCGa--CGGa---GgCGGCGGCGCaGc -5'
23714 5' -64.7 NC_005261.1 + 101142 0.74 0.167463
Target:  5'- -cGAGGCUGCCgcgcggcggCgCGCCGCCGCGa-- -3'
miRNA:   3'- ucCUCCGACGGa--------G-GCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 132056 0.74 0.171539
Target:  5'- gGGGAGGUggcgGCCgaggUCGCgGCCGcCGUCGc -3'
miRNA:   3'- -UCCUCCGa---CGGa---GGCGgCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 33317 0.73 0.175703
Target:  5'- cAGGAccGCUGCCgCCGCCGCCGcCGcCGc -3'
miRNA:   3'- -UCCUc-CGACGGaGGCGGCGGC-GCaGC- -5'
23714 5' -64.7 NC_005261.1 + 23604 0.73 0.177394
Target:  5'- uGGuGGCUGUCgCCGCCGCUGCcggggcgcggcggggGUCGg -3'
miRNA:   3'- uCCuCCGACGGaGGCGGCGGCG---------------CAGC- -5'
23714 5' -64.7 NC_005261.1 + 102954 0.73 0.186067
Target:  5'- cGGcGGCgGCCgcgggcgccgcgggcUCCGCCGCCGCGcgCGa -3'
miRNA:   3'- uCCuCCGaCGG---------------AGGCGGCGGCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 107699 0.73 0.197899
Target:  5'- cGGGGGCgccGCCgaacgUCGCUGCCGCGgcaggCGg -3'
miRNA:   3'- uCCUCCGa--CGGa----GGCGGCGGCGCa----GC- -5'
23714 5' -64.7 NC_005261.1 + 105165 0.72 0.202621
Target:  5'- gAGGGcGGCguccacgggGCCcgCCGCCGCCGCGg-- -3'
miRNA:   3'- -UCCU-CCGa--------CGGa-GGCGGCGGCGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.