miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 103561 0.71 0.267228
Target:  5'- cAGG-GGCcccgUGCCgCCGCCGCCcGCGcCGu -3'
miRNA:   3'- -UCCuCCG----ACGGaGGCGGCGG-CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 13646 0.71 0.267228
Target:  5'- cGGAaGCgcgcGCCgugCCGCCGCCGCGg-- -3'
miRNA:   3'- uCCUcCGa---CGGa--GGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 29038 0.7 0.273304
Target:  5'- gGGGAugacacGGggGCCgCCGCCGCCGCGgcCGa -3'
miRNA:   3'- -UCCU------CCgaCGGaGGCGGCGGCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 109165 0.7 0.273304
Target:  5'- cAGGccGGGCagGuUCUCCGCuagcagCGCCGCGUCGg -3'
miRNA:   3'- -UCC--UCCGa-C-GGAGGCG------GCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 99856 0.7 0.273304
Target:  5'- cGGcaccGGCcGCCgcgcgCCGCCGCCGC-UCGg -3'
miRNA:   3'- uCCu---CCGaCGGa----GGCGGCGGCGcAGC- -5'
23714 5' -64.7 NC_005261.1 + 28809 0.7 0.273304
Target:  5'- cGGAGGCaGCCgCCGCCgaagccgaggcgGCCGCGgcugaggCGg -3'
miRNA:   3'- uCCUCCGaCGGaGGCGG------------CGGCGCa------GC- -5'
23714 5' -64.7 NC_005261.1 + 12127 0.7 0.27949
Target:  5'- cAGGAuGGC-GCCcgCCGCCGCgGCGgccgCGc -3'
miRNA:   3'- -UCCU-CCGaCGGa-GGCGGCGgCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 58717 0.7 0.27949
Target:  5'- -aGAGGUgcGCCaCCGCCGCCGCG-Ca -3'
miRNA:   3'- ucCUCCGa-CGGaGGCGGCGGCGCaGc -5'
23714 5' -64.7 NC_005261.1 + 53134 0.7 0.27949
Target:  5'- cAGGGcGGCguacgcgcgcGCCgUCgCGCCGCCGuCGUCGg -3'
miRNA:   3'- -UCCU-CCGa---------CGG-AG-GCGGCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 30540 0.7 0.285787
Target:  5'- gAGGAGGaCgaggaagagGCCgCCGCCGCCGgGgccUCGg -3'
miRNA:   3'- -UCCUCC-Ga--------CGGaGGCGGCGGCgC---AGC- -5'
23714 5' -64.7 NC_005261.1 + 135348 0.7 0.285787
Target:  5'- cGGAgcGGUUcGCCcCCgaggGCCGCCGCGUCa -3'
miRNA:   3'- uCCU--CCGA-CGGaGG----CGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 124221 0.7 0.292196
Target:  5'- -cGuGGCUGCCagcagcccaaCCGCCGCCGCGg-- -3'
miRNA:   3'- ucCuCCGACGGa---------GGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 58523 0.7 0.298716
Target:  5'- cAGGAGGCggaucgaGCCcagCCGCCGCCcgggcuccugcGcCGUCGu -3'
miRNA:   3'- -UCCUCCGa------CGGa--GGCGGCGG-----------C-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 120311 0.7 0.298716
Target:  5'- cGGcGAGGCUGUCUgCGaggcgCGCUGCGUCc -3'
miRNA:   3'- -UC-CUCCGACGGAgGCg----GCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 33071 0.7 0.305348
Target:  5'- gGGGAcgcGGCgcugGCggCCGCCGCCacauccccuGCGUCGg -3'
miRNA:   3'- -UCCU---CCGa---CGgaGGCGGCGG---------CGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 106327 0.7 0.305348
Target:  5'- cGuGAGcCacgGCC-CCGCCGCCGCGUCc -3'
miRNA:   3'- uC-CUCcGa--CGGaGGCGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 128710 0.7 0.305348
Target:  5'- cGGGAGGCgcgcccggGCCccgcCCGcCCGCCGagcuGUCGg -3'
miRNA:   3'- -UCCUCCGa-------CGGa---GGC-GGCGGCg---CAGC- -5'
23714 5' -64.7 NC_005261.1 + 97842 0.7 0.312093
Target:  5'- cGGGGGCgGCgggCGCCGCCGCGgcagCGc -3'
miRNA:   3'- uCCUCCGaCGgagGCGGCGGCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 121805 0.7 0.312093
Target:  5'- cAGGGGGCgcguggcugGgCUCUgcggGCCGCCGCGgCGg -3'
miRNA:   3'- -UCCUCCGa--------CgGAGG----CGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 93 0.69 0.31895
Target:  5'- cGGGGcGCgcccccggGCC-CCGCCGCcCGCGcCGg -3'
miRNA:   3'- uCCUC-CGa-------CGGaGGCGGCG-GCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.