miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 137776 0.69 0.31895
Target:  5'- cGGGGcGCgcccccggGCC-CCGCCGCcCGCGcCGg -3'
miRNA:   3'- uCCUC-CGa-------CGGaGGCGGCG-GCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 54785 0.69 0.32592
Target:  5'- cAGGAcGGCgcGCC-CCGCCGCCuccGCGUa- -3'
miRNA:   3'- -UCCU-CCGa-CGGaGGCGGCGG---CGCAgc -5'
23714 5' -64.7 NC_005261.1 + 132966 0.69 0.32592
Target:  5'- -cGuGGCcGCCUUCGUCGCCGCG-Ca -3'
miRNA:   3'- ucCuCCGaCGGAGGCGGCGGCGCaGc -5'
23714 5' -64.7 NC_005261.1 + 631 0.69 0.333002
Target:  5'- gGGGAuguGGCgGCggCCGCCagcGCCGCGUCc -3'
miRNA:   3'- -UCCU---CCGaCGgaGGCGG---CGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 30873 0.69 0.333002
Target:  5'- gAGGGGGCcGCCggccCUGCCGCC-CGagcUCGg -3'
miRNA:   3'- -UCCUCCGaCGGa---GGCGGCGGcGC---AGC- -5'
23714 5' -64.7 NC_005261.1 + 78850 0.69 0.340196
Target:  5'- cGGcGGC-GCCcgCCGCCggagcgcgaGCCGCGUCa -3'
miRNA:   3'- uCCuCCGaCGGa-GGCGG---------CGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 99697 0.69 0.343105
Target:  5'- -uGAGGCgcGCCagcUCCGCCacggucgcgcgcgugGCCGCGUCa -3'
miRNA:   3'- ucCUCCGa-CGG---AGGCGG---------------CGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 109756 0.69 0.347502
Target:  5'- ---cGGCU-CC-CgGCCGCCGCGUCGc -3'
miRNA:   3'- uccuCCGAcGGaGgCGGCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 102701 0.69 0.347502
Target:  5'- -cGucGCUGCCgCCGucuCCGCCGCGUCc -3'
miRNA:   3'- ucCucCGACGGaGGC---GGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 75513 0.69 0.354173
Target:  5'- uGGAGGCgcacGCCguggUCGCCGCgcugcagcggcugCGCGUCc -3'
miRNA:   3'- uCCUCCGa---CGGa---GGCGGCG-------------GCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 70361 0.69 0.35492
Target:  5'- cGGGAGGCggcgcGCCUCCacggcGCCGCUG-GcCGa -3'
miRNA:   3'- -UCCUCCGa----CGGAGG-----CGGCGGCgCaGC- -5'
23714 5' -64.7 NC_005261.1 + 53320 0.69 0.35492
Target:  5'- cAGGAGGCcgcaggugugcGCCUCUGCgcccgccccCGCCGCGcuuUCGg -3'
miRNA:   3'- -UCCUCCGa----------CGGAGGCG---------GCGGCGC---AGC- -5'
23714 5' -64.7 NC_005261.1 + 33863 0.69 0.35492
Target:  5'- cGGGAGG--GCCccCCGCCGCCcgccuccggcGCGUCa -3'
miRNA:   3'- -UCCUCCgaCGGa-GGCGGCGG----------CGCAGc -5'
23714 5' -64.7 NC_005261.1 + 29625 0.69 0.35492
Target:  5'- cGGGAGcGUgacggcGCCgCUGCCGCCG-GUCGg -3'
miRNA:   3'- -UCCUC-CGa-----CGGaGGCGGCGGCgCAGC- -5'
23714 5' -64.7 NC_005261.1 + 28768 0.69 0.35492
Target:  5'- cGGGGGC-GCCUggGCCGCgGCG-CGg -3'
miRNA:   3'- uCCUCCGaCGGAggCGGCGgCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 116009 0.68 0.362449
Target:  5'- -cGAGGCgGCCUgaGCCGCCGaCGgcgCGc -3'
miRNA:   3'- ucCUCCGaCGGAggCGGCGGC-GCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 55363 0.68 0.362449
Target:  5'- cGGcAGGCccaGCCUggcCCGCCGCCGCuGcCGc -3'
miRNA:   3'- uCC-UCCGa--CGGA---GGCGGCGGCG-CaGC- -5'
23714 5' -64.7 NC_005261.1 + 107159 0.68 0.362449
Target:  5'- uGGAGGCggccagcGCCUCCGUCucgGCgGCGUa- -3'
miRNA:   3'- uCCUCCGa------CGGAGGCGG---CGgCGCAgc -5'
23714 5' -64.7 NC_005261.1 + 3444 0.68 0.370087
Target:  5'- cAGGcGGGC-GCgCgggCCGCCGCgccgCGCGUCGa -3'
miRNA:   3'- -UCC-UCCGaCG-Ga--GGCGGCG----GCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 107288 0.68 0.370087
Target:  5'- cAGGcGGCagGCaCUCCGCCGCgGCcaCGg -3'
miRNA:   3'- -UCCuCCGa-CG-GAGGCGGCGgCGcaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.