miRNA display CGI


Results 81 - 100 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 102554 0.68 0.370087
Target:  5'- cAGGcgcccGGCggacaccGCCU-CGCCGuCCGCGUCGg -3'
miRNA:   3'- -UCCu----CCGa------CGGAgGCGGC-GGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 131070 0.68 0.370087
Target:  5'- cAGGccgugcGGGaCUGCCUggccacguacgCCGUCGCCGCGcCGc -3'
miRNA:   3'- -UCC------UCC-GACGGA-----------GGCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 105110 0.68 0.373174
Target:  5'- cGGGGGCUuGCCcgcgcgggcgcgggCCGCCGgCGCG-CGc -3'
miRNA:   3'- uCCUCCGA-CGGa-------------GGCGGCgGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 87779 0.68 0.377835
Target:  5'- -cGAGGgUcaccGUCUUgGCCGCCGCGUCc -3'
miRNA:   3'- ucCUCCgA----CGGAGgCGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 121414 0.68 0.377835
Target:  5'- -cGAcGGCUGCCgCCGCCGCUacgggGCGgCGg -3'
miRNA:   3'- ucCU-CCGACGGaGGCGGCGG-----CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 73596 0.68 0.377835
Target:  5'- cGGAGGCggcgGCCgcgagCgCGCgGCC-CGUCGu -3'
miRNA:   3'- uCCUCCGa---CGGa----G-GCGgCGGcGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 28200 0.68 0.377835
Target:  5'- cGGcGGCcucGCCgCCGCUGCCGCGg-- -3'
miRNA:   3'- uCCuCCGa--CGGaGGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 29136 0.68 0.384902
Target:  5'- cGGGGGGC-GCC-CCGCCGgacccgcCCGCGg-- -3'
miRNA:   3'- -UCCUCCGaCGGaGGCGGC-------GGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 14705 0.68 0.385692
Target:  5'- gGGGGGGC-GCCUUCgGCCGagauuccaGCGUCa -3'
miRNA:   3'- -UCCUCCGaCGGAGG-CGGCgg------CGCAGc -5'
23714 5' -64.7 NC_005261.1 + 131854 0.68 0.385692
Target:  5'- cGGGGuguccaagcGGCUGCUUgagcuggcggCCGCCGCCGCacgCGa -3'
miRNA:   3'- -UCCU---------CCGACGGA----------GGCGGCGGCGca-GC- -5'
23714 5' -64.7 NC_005261.1 + 127207 0.68 0.393656
Target:  5'- cGGAacagcGGCgcgcgGCUUaaGCCGCgCGCGUCGa -3'
miRNA:   3'- uCCU-----CCGa----CGGAggCGGCG-GCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 109807 0.68 0.401725
Target:  5'- cGGccGGCgccGCUUCCGCCGCgGCGg-- -3'
miRNA:   3'- uCCu-CCGa--CGGAGGCGGCGgCGCagc -5'
23714 5' -64.7 NC_005261.1 + 110296 0.68 0.401725
Target:  5'- uGGcGGGC-GCCUgCGCCGCCGaGUaCGg -3'
miRNA:   3'- uCC-UCCGaCGGAgGCGGCGGCgCA-GC- -5'
23714 5' -64.7 NC_005261.1 + 83056 0.68 0.401725
Target:  5'- gAGGGGGCUcCCUgCgCGCCcCCGCGgCGg -3'
miRNA:   3'- -UCCUCCGAcGGA-G-GCGGcGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 62666 0.68 0.401725
Target:  5'- aAGGAGGCcagcGCCacgUCCGCCagcuGCaCGCGcCGg -3'
miRNA:   3'- -UCCUCCGa---CGG---AGGCGG----CG-GCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 29969 0.68 0.401725
Target:  5'- -aGAGGCgGCgCggugcgCCGCCGgCGCGUCc -3'
miRNA:   3'- ucCUCCGaCG-Ga-----GGCGGCgGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 129578 0.68 0.401725
Target:  5'- gAGGAGGCgGCCg-CG-CGCCGCGggacacgCGg -3'
miRNA:   3'- -UCCUCCGaCGGagGCgGCGGCGCa------GC- -5'
23714 5' -64.7 NC_005261.1 + 21761 0.68 0.401725
Target:  5'- uGGAGcGCgcGCCgggcgagCCGCCGCgGCG-CGg -3'
miRNA:   3'- uCCUC-CGa-CGGa------GGCGGCGgCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 37838 0.68 0.409899
Target:  5'- uGGA-GC-GCCUUCGCCGCCGaCuUCGg -3'
miRNA:   3'- uCCUcCGaCGGAGGCGGCGGC-GcAGC- -5'
23714 5' -64.7 NC_005261.1 + 101235 0.68 0.409899
Target:  5'- gAGGuGGC-GCCUCaGCuCGCgcagCGCGUCGa -3'
miRNA:   3'- -UCCuCCGaCGGAGgCG-GCG----GCGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.