miRNA display CGI


Results 61 - 80 of 169 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 6245 0.67 0.426553
Target:  5'- gGGGAGG--GCCUgcCCGCC-CCGCGgggCGg -3'
miRNA:   3'- -UCCUCCgaCGGA--GGCGGcGGCGCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 121637 0.67 0.421515
Target:  5'- ---cGGCgGCCgCCGCCGgcgagcgcgggcuguCCGCGUCGg -3'
miRNA:   3'- uccuCCGaCGGaGGCGGC---------------GGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 42268 0.67 0.418176
Target:  5'- -cGAGGCgGCCgcgCCcagcaGCCGCCGCGa-- -3'
miRNA:   3'- ucCUCCGaCGGa--GG-----CGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 118618 0.67 0.418176
Target:  5'- cGGccGUUGCCcUgGCCGCCGCGgCGg -3'
miRNA:   3'- uCCucCGACGGaGgCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 111615 0.67 0.418176
Target:  5'- cGGcuGGGCUgcggcGCCgugCCGCCGCCGCc--- -3'
miRNA:   3'- uCC--UCCGA-----CGGa--GGCGGCGGCGcagc -5'
23714 5' -64.7 NC_005261.1 + 74460 0.67 0.418176
Target:  5'- uGGGGGCgccGCCcCCGgCGCgGCGUg- -3'
miRNA:   3'- uCCUCCGa--CGGaGGCgGCGgCGCAgc -5'
23714 5' -64.7 NC_005261.1 + 37838 0.68 0.409899
Target:  5'- uGGA-GC-GCCUUCGCCGCCGaCuUCGg -3'
miRNA:   3'- uCCUcCGaCGGAGGCGGCGGC-GcAGC- -5'
23714 5' -64.7 NC_005261.1 + 101235 0.68 0.409899
Target:  5'- gAGGuGGC-GCCUCaGCuCGCgcagCGCGUCGa -3'
miRNA:   3'- -UCCuCCGaCGGAGgCG-GCG----GCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 25283 0.68 0.409899
Target:  5'- gAGGGGGCgcgGUCUgUgGCCGUgaGCGUCGu -3'
miRNA:   3'- -UCCUCCGa--CGGA-GgCGGCGg-CGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 95762 0.68 0.409899
Target:  5'- cGGGGGCgccgggaGCCU-CGCgCGCUGCGcCGg -3'
miRNA:   3'- uCCUCCGa------CGGAgGCG-GCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 131243 0.68 0.409899
Target:  5'- -cGAGGCUGaCCucgccgaggUCCGCUGCCuGCGUg- -3'
miRNA:   3'- ucCUCCGAC-GG---------AGGCGGCGG-CGCAgc -5'
23714 5' -64.7 NC_005261.1 + 110296 0.68 0.401725
Target:  5'- uGGcGGGC-GCCUgCGCCGCCGaGUaCGg -3'
miRNA:   3'- uCC-UCCGaCGGAgGCGGCGGCgCA-GC- -5'
23714 5' -64.7 NC_005261.1 + 21761 0.68 0.401725
Target:  5'- uGGAGcGCgcGCCgggcgagCCGCCGCgGCG-CGg -3'
miRNA:   3'- uCCUC-CGa-CGGa------GGCGGCGgCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 29969 0.68 0.401725
Target:  5'- -aGAGGCgGCgCggugcgCCGCCGgCGCGUCc -3'
miRNA:   3'- ucCUCCGaCG-Ga-----GGCGGCgGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 62666 0.68 0.401725
Target:  5'- aAGGAGGCcagcGCCacgUCCGCCagcuGCaCGCGcCGg -3'
miRNA:   3'- -UCCUCCGa---CGG---AGGCGG----CG-GCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 83056 0.68 0.401725
Target:  5'- gAGGGGGCUcCCUgCgCGCCcCCGCGgCGg -3'
miRNA:   3'- -UCCUCCGAcGGA-G-GCGGcGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 129578 0.68 0.401725
Target:  5'- gAGGAGGCgGCCg-CG-CGCCGCGggacacgCGg -3'
miRNA:   3'- -UCCUCCGaCGGagGCgGCGGCGCa------GC- -5'
23714 5' -64.7 NC_005261.1 + 109807 0.68 0.401725
Target:  5'- cGGccGGCgccGCUUCCGCCGCgGCGg-- -3'
miRNA:   3'- uCCu-CCGa--CGGAGGCGGCGgCGCagc -5'
23714 5' -64.7 NC_005261.1 + 127207 0.68 0.393656
Target:  5'- cGGAacagcGGCgcgcgGCUUaaGCCGCgCGCGUCGa -3'
miRNA:   3'- uCCU-----CCGa----CGGAggCGGCG-GCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 131854 0.68 0.385692
Target:  5'- cGGGGuguccaagcGGCUGCUUgagcuggcggCCGCCGCCGCacgCGa -3'
miRNA:   3'- -UCCU---------CCGACGGA----------GGCGGCGGCGca-GC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.