miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 93 0.69 0.31895
Target:  5'- cGGGGcGCgcccccggGCC-CCGCCGCcCGCGcCGg -3'
miRNA:   3'- uCCUC-CGa-------CGGaGGCGGCG-GCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 536 0.72 0.21738
Target:  5'- cGGGGGGCaggGCggacggcggCUCgGCCGCCGCG-CGg -3'
miRNA:   3'- -UCCUCCGa--CG---------GAGgCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 631 0.69 0.333002
Target:  5'- gGGGAuguGGCgGCggCCGCCagcGCCGCGUCc -3'
miRNA:   3'- -UCCU---CCGaCGgaGGCGG---CGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 1312 0.66 0.506091
Target:  5'- cGGcGGCggcacGCgCUCCgggacGCCGCCGCGcCGc -3'
miRNA:   3'- uCCuCCGa----CG-GAGG-----CGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 2788 0.66 0.469876
Target:  5'- gAGG-GGCUGCCgCCgGCgGCCGgGagGg -3'
miRNA:   3'- -UCCuCCGACGGaGG-CGgCGGCgCagC- -5'
23714 5' -64.7 NC_005261.1 + 3444 0.68 0.370087
Target:  5'- cAGGcGGGC-GCgCgggCCGCCGCgccgCGCGUCGa -3'
miRNA:   3'- -UCC-UCCGaCG-Ga--GGCGGCG----GCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 4914 0.8 0.058617
Target:  5'- cGGcGGCUGCCUCCGCCgcgGCCGCGa-- -3'
miRNA:   3'- uCCuCCGACGGAGGCGG---CGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 4953 0.66 0.506091
Target:  5'- cGGcccAGGC-GCCcCCgGCCGCgGCGUCc -3'
miRNA:   3'- uCC---UCCGaCGGaGG-CGGCGgCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 5128 0.66 0.496921
Target:  5'- cGGGcggcccgccGGCgcucgcgcGCCUCgGCCcggcggGCCGCGUCGa -3'
miRNA:   3'- uCCU---------CCGa-------CGGAGgCGG------CGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 5976 0.66 0.478809
Target:  5'- ---cGGCU-CCUCUGCCGC-GCGUCu -3'
miRNA:   3'- uccuCCGAcGGAGGCGGCGgCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 6245 0.67 0.426553
Target:  5'- gGGGAGG--GCCUgcCCGCC-CCGCGgggCGg -3'
miRNA:   3'- -UCCUCCgaCGGA--GGCGGcGGCGCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 7620 0.75 0.137872
Target:  5'- uGGAucugccucuGCUGCCgCCGCUGCCGCGUCu -3'
miRNA:   3'- uCCUc--------CGACGGaGGCGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 11830 0.67 0.426553
Target:  5'- uGGGGGCggggGCC-CCGCgGgCGCG-CGu -3'
miRNA:   3'- uCCUCCGa---CGGaGGCGgCgGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 12127 0.7 0.27949
Target:  5'- cAGGAuGGC-GCCcgCCGCCGCgGCGgccgCGc -3'
miRNA:   3'- -UCCU-CCGaCGGa-GGCGGCGgCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 12324 0.71 0.244014
Target:  5'- cGGcGGGCgcgcgcuugGCCggcgcggCCGCCGCCGCGgCGg -3'
miRNA:   3'- uCC-UCCGa--------CGGa------GGCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 12781 0.66 0.496921
Target:  5'- cGGGGGGCUcGUCggcgagCuCGUCGUCgGCGUCGc -3'
miRNA:   3'- -UCCUCCGA-CGGa-----G-GCGGCGG-CGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 13646 0.71 0.267228
Target:  5'- cGGAaGCgcgcGCCgugCCGCCGCCGCGg-- -3'
miRNA:   3'- uCCUcCGa---CGGa--GGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 14705 0.68 0.385692
Target:  5'- gGGGGGGC-GCCUUCgGCCGagauuccaGCGUCa -3'
miRNA:   3'- -UCCUCCGaCGGAGG-CGGCgg------CGCAGc -5'
23714 5' -64.7 NC_005261.1 + 17176 0.67 0.435029
Target:  5'- cGGGcguGGGCaGCC-CUGCCGCgGCGgCGa -3'
miRNA:   3'- -UCC---UCCGaCGGaGGCGGCGgCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 21761 0.68 0.401725
Target:  5'- uGGAGcGCgcGCCgggcgagCCGCCGCgGCG-CGg -3'
miRNA:   3'- uCCUC-CGa-CGGa------GGCGGCGgCGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.