miRNA display CGI


Results 41 - 60 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 33071 0.7 0.305348
Target:  5'- gGGGAcgcGGCgcugGCggCCGCCGCCacauccccuGCGUCGg -3'
miRNA:   3'- -UCCU---CCGa---CGgaGGCGGCGG---------CGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 33317 0.73 0.175703
Target:  5'- cAGGAccGCUGCCgCCGCCGCCGcCGcCGc -3'
miRNA:   3'- -UCCUc-CGACGGaGGCGGCGGC-GCaGC- -5'
23714 5' -64.7 NC_005261.1 + 33378 0.71 0.261262
Target:  5'- cGGGcugcGGGCcGCCgcagCCGCCGCCGCa--- -3'
miRNA:   3'- -UCC----UCCGaCGGa---GGCGGCGGCGcagc -5'
23714 5' -64.7 NC_005261.1 + 33863 0.69 0.35492
Target:  5'- cGGGAGG--GCCccCCGCCGCCcgccuccggcGCGUCa -3'
miRNA:   3'- -UCCUCCgaCGGa-GGCGGCGG----------CGCAGc -5'
23714 5' -64.7 NC_005261.1 + 33966 0.67 0.443602
Target:  5'- uGGAccuuCUGCCgccgCCGCCGCCGCccCGg -3'
miRNA:   3'- uCCUcc--GACGGa---GGCGGCGGCGcaGC- -5'
23714 5' -64.7 NC_005261.1 + 37838 0.68 0.409899
Target:  5'- uGGA-GC-GCCUUCGCCGCCGaCuUCGg -3'
miRNA:   3'- uCCUcCGaCGGAGGCGGCGGC-GcAGC- -5'
23714 5' -64.7 NC_005261.1 + 39793 0.66 0.496921
Target:  5'- cGGGGGGCgGCg-CgGCCGCCgGCGcCa -3'
miRNA:   3'- -UCCUCCGaCGgaGgCGGCGG-CGCaGc -5'
23714 5' -64.7 NC_005261.1 + 42268 0.67 0.418176
Target:  5'- -cGAGGCgGCCgcgCCcagcaGCCGCCGCGa-- -3'
miRNA:   3'- ucCUCCGaCGGa--GG-----CGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 42631 0.66 0.478809
Target:  5'- cAGcGGGGacucgGCCgCCGCgGCCGCG-CGg -3'
miRNA:   3'- -UC-CUCCga---CGGaGGCGgCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 42673 0.66 0.478809
Target:  5'- cGGcGGCcggGCCgCCGCCggcaGCCGCG-CGg -3'
miRNA:   3'- uCCuCCGa--CGGaGGCGG----CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 43415 0.83 0.0359
Target:  5'- cGGGGGCgGCCUCCGCCGCCgGCGg-- -3'
miRNA:   3'- uCCUCCGaCGGAGGCGGCGG-CGCagc -5'
23714 5' -64.7 NC_005261.1 + 43832 0.67 0.44102
Target:  5'- uGGAGaaGCUGCUcggcgagggcgaggaCGCgGCCGCGUCGu -3'
miRNA:   3'- uCCUC--CGACGGag-------------GCGgCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 44029 0.66 0.469876
Target:  5'- cGGGcGGCcGCCgcgCgGCgGCCGCGggCGg -3'
miRNA:   3'- -UCCuCCGaCGGa--GgCGgCGGCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 44223 0.66 0.51905
Target:  5'- cGGGAGcgcgcGCUGCUggCCGCCcagcgcgcggccgacGCCGCGgcgCGc -3'
miRNA:   3'- -UCCUC-----CGACGGa-GGCGG---------------CGGCGCa--GC- -5'
23714 5' -64.7 NC_005261.1 + 44274 0.71 0.261262
Target:  5'- gGGGGGGCggGgC-CCGCCGCCaGCGgCGg -3'
miRNA:   3'- -UCCUCCGa-CgGaGGCGGCGG-CGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 47621 0.76 0.113152
Target:  5'- cGGGGGCgGCCgCgGCCGCCGCG-CGc -3'
miRNA:   3'- uCCUCCGaCGGaGgCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 47690 0.66 0.469876
Target:  5'- ---cGGCcGCC-CgCGgCGCCGCGUCGg -3'
miRNA:   3'- uccuCCGaCGGaG-GCgGCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 48804 0.67 0.435029
Target:  5'- cGuGAGGCcgugcgcgGCgUCCGCgaCGCCGuCGUCGg -3'
miRNA:   3'- uC-CUCCGa-------CGgAGGCG--GCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 49241 0.72 0.207441
Target:  5'- cAGGucGGCcGCCgCCGCgGCgGCGUCGg -3'
miRNA:   3'- -UCCu-CCGaCGGaGGCGgCGgCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 49502 0.67 0.451398
Target:  5'- gAGGAGGCcggUGaCCUCCgaaaaggucgcggGCCaGCCGcCGUCc -3'
miRNA:   3'- -UCCUCCG---AC-GGAGG-------------CGG-CGGC-GCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.