miRNA display CGI


Results 61 - 80 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 49958 0.72 0.227722
Target:  5'- aAGGAGGCggcGCCgucgucauccCCGgCGCCGcCGUCGu -3'
miRNA:   3'- -UCCUCCGa--CGGa---------GGCgGCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 51320 0.66 0.487825
Target:  5'- ---cGGC-GCCgCCGCCGCCuuCGUCGg -3'
miRNA:   3'- uccuCCGaCGGaGGCGGCGGc-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 53134 0.7 0.27949
Target:  5'- cAGGGcGGCguacgcgcgcGCCgUCgCGCCGCCGuCGUCGg -3'
miRNA:   3'- -UCCU-CCGa---------CGG-AG-GCGGCGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 53320 0.69 0.35492
Target:  5'- cAGGAGGCcgcaggugugcGCCUCUGCgcccgccccCGCCGCGcuuUCGg -3'
miRNA:   3'- -UCCUCCGa----------CGGAGGCG---------GCGGCGC---AGC- -5'
23714 5' -64.7 NC_005261.1 + 54785 0.69 0.32592
Target:  5'- cAGGAcGGCgcGCC-CCGCCGCCuccGCGUa- -3'
miRNA:   3'- -UCCU-CCGa-CGGaGGCGGCGG---CGCAgc -5'
23714 5' -64.7 NC_005261.1 + 55363 0.68 0.362449
Target:  5'- cGGcAGGCccaGCCUggcCCGCCGCCGCuGcCGc -3'
miRNA:   3'- uCC-UCCGa--CGGA---GGCGGCGGCG-CaGC- -5'
23714 5' -64.7 NC_005261.1 + 55800 0.66 0.487825
Target:  5'- cGGcGcGCgGCCUUCGCCGCCGUa--- -3'
miRNA:   3'- uCCuC-CGaCGGAGGCGGCGGCGcagc -5'
23714 5' -64.7 NC_005261.1 + 58313 0.67 0.429086
Target:  5'- gAGGGGGCgGCCcagccgcccgagcaCCGCCucgcggaGCCGCGcCGg -3'
miRNA:   3'- -UCCUCCGaCGGa-------------GGCGG-------CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 58523 0.7 0.298716
Target:  5'- cAGGAGGCggaucgaGCCcagCCGCCGCCcgggcuccugcGcCGUCGu -3'
miRNA:   3'- -UCCUCCGa------CGGa--GGCGGCGG-----------C-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 58717 0.7 0.27949
Target:  5'- -aGAGGUgcGCCaCCGCCGCCGCG-Ca -3'
miRNA:   3'- ucCUCCGa-CGGaGGCGGCGGCGCaGc -5'
23714 5' -64.7 NC_005261.1 + 59472 0.74 0.167463
Target:  5'- cGGGGGGCagcGCCggcgCgGCCGCCGCGcCa -3'
miRNA:   3'- -UCCUCCGa--CGGa---GgCGGCGGCGCaGc -5'
23714 5' -64.7 NC_005261.1 + 59655 0.67 0.461028
Target:  5'- -cGAGGCggGCgaCUGCgGCCGgGUCGu -3'
miRNA:   3'- ucCUCCGa-CGgaGGCGgCGGCgCAGC- -5'
23714 5' -64.7 NC_005261.1 + 60227 0.76 0.11037
Target:  5'- gGGGcgcccccaGGGCcGCCUCCGCCGCgGCGggagCGg -3'
miRNA:   3'- -UCC--------UCCGaCGGAGGCGGCGgCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 60410 0.67 0.426553
Target:  5'- cGGGccGGCccggGCCcggggCCGCCGCgcuCGCGUCGc -3'
miRNA:   3'- uCCU--CCGa---CGGa----GGCGGCG---GCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 62666 0.68 0.401725
Target:  5'- aAGGAGGCcagcGCCacgUCCGCCagcuGCaCGCGcCGg -3'
miRNA:   3'- -UCCUCCGa---CGG---AGGCGG----CG-GCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 63042 0.66 0.506091
Target:  5'- cGGcGAGGCgGUCg-CGCagcagCGCCGCGUCGc -3'
miRNA:   3'- -UC-CUCCGaCGGagGCG-----GCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 63141 0.67 0.426553
Target:  5'- cGGGGGGCUGCUUgaaCUGCagcuCCGUGUCc -3'
miRNA:   3'- -UCCUCCGACGGA---GGCGgc--GGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 64118 0.66 0.469876
Target:  5'- cGGGcGGCacgUGCCgcgCgGCCGCCagcGCGUCc -3'
miRNA:   3'- -UCCuCCG---ACGGa--GgCGGCGG---CGCAGc -5'
23714 5' -64.7 NC_005261.1 + 67480 0.66 0.487825
Target:  5'- cAGGAaGCccgcgGCCgCCGCCaGCCGCG-CGu -3'
miRNA:   3'- -UCCUcCGa----CGGaGGCGG-CGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 68296 0.66 0.478809
Target:  5'- cGGccgcGGGCgcgGaCCUCUGCgGCCGCuUCGa -3'
miRNA:   3'- uCC----UCCGa--C-GGAGGCGgCGGCGcAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.