miRNA display CGI


Results 81 - 100 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23714 5' -64.7 NC_005261.1 + 68761 0.71 0.255405
Target:  5'- -cGGGGC-GCCgcggaGCCGCCGUGUCGa -3'
miRNA:   3'- ucCUCCGaCGGagg--CGGCGGCGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 70361 0.69 0.35492
Target:  5'- cGGGAGGCggcgcGCCUCCacggcGCCGCUG-GcCGa -3'
miRNA:   3'- -UCCUCCGa----CGGAGG-----CGGCGGCgCaGC- -5'
23714 5' -64.7 NC_005261.1 + 72876 0.67 0.435029
Target:  5'- cGGGcAGGUccGCC-CCGCCGCCGgGg-- -3'
miRNA:   3'- -UCC-UCCGa-CGGaGGCGGCGGCgCagc -5'
23714 5' -64.7 NC_005261.1 + 72955 0.66 0.487825
Target:  5'- cGGcaccGGCUcGCgC-CCGCCGCCGCGg-- -3'
miRNA:   3'- uCCu---CCGA-CG-GaGGCGGCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 73596 0.68 0.377835
Target:  5'- cGGAGGCggcgGCCgcgagCgCGCgGCC-CGUCGu -3'
miRNA:   3'- uCCUCCGa---CGGa----G-GCGgCGGcGCAGC- -5'
23714 5' -64.7 NC_005261.1 + 74460 0.67 0.418176
Target:  5'- uGGGGGCgccGCCcCCGgCGCgGCGUg- -3'
miRNA:   3'- uCCUCCGa--CGGaGGCgGCGgCGCAgc -5'
23714 5' -64.7 NC_005261.1 + 75513 0.69 0.354173
Target:  5'- uGGAGGCgcacGCCguggUCGCCGCgcugcagcggcugCGCGUCc -3'
miRNA:   3'- uCCUCCGa---CGGa---GGCGGCG-------------GCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 75583 0.67 0.435029
Target:  5'- cGGcGGCgcgGCgCUCgCGCgCGCCGCGgacgCGg -3'
miRNA:   3'- uCCuCCGa--CG-GAG-GCG-GCGGCGCa---GC- -5'
23714 5' -64.7 NC_005261.1 + 78850 0.69 0.340196
Target:  5'- cGGcGGC-GCCcgCCGCCggagcgcgaGCCGCGUCa -3'
miRNA:   3'- uCCuCCGaCGGa-GGCGG---------CGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 82990 0.74 0.152015
Target:  5'- cGGAGGCggccGCCUCgCGCaccgaGCCGcCGUCGc -3'
miRNA:   3'- uCCUCCGa---CGGAG-GCGg----CGGC-GCAGC- -5'
23714 5' -64.7 NC_005261.1 + 83056 0.68 0.401725
Target:  5'- gAGGGGGCUcCCUgCgCGCCcCCGCGgCGg -3'
miRNA:   3'- -UCCUCCGAcGGA-G-GCGGcGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 84364 0.74 0.15957
Target:  5'- aAGGcgccgcccgcGGGCUcgGCCUCgGCCGCCGCcUCGa -3'
miRNA:   3'- -UCC----------UCCGA--CGGAGgCGGCGGCGcAGC- -5'
23714 5' -64.7 NC_005261.1 + 87779 0.68 0.377835
Target:  5'- -cGAGGgUcaccGUCUUgGCCGCCGCGUCc -3'
miRNA:   3'- ucCUCCgA----CGGAGgCGGCGGCGCAGc -5'
23714 5' -64.7 NC_005261.1 + 88325 0.8 0.056694
Target:  5'- gGGGAGGCUgcaaggcuggcggcGCC-CCGCCGCCGCGgCGu -3'
miRNA:   3'- -UCCUCCGA--------------CGGaGGCGGCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 90770 0.67 0.426553
Target:  5'- -cGAGGCcGCCgaggCCGCUGCgGCGgcCGg -3'
miRNA:   3'- ucCUCCGaCGGa---GGCGGCGgCGCa-GC- -5'
23714 5' -64.7 NC_005261.1 + 95013 0.66 0.487825
Target:  5'- gGGGcGGGCUauaaaGCCgCCGCCGgCgGCGcUCGg -3'
miRNA:   3'- -UCC-UCCGA-----CGGaGGCGGC-GgCGC-AGC- -5'
23714 5' -64.7 NC_005261.1 + 95762 0.68 0.409899
Target:  5'- cGGGGGCgccgggaGCCU-CGCgCGCUGCGcCGg -3'
miRNA:   3'- uCCUCCGa------CGGAgGCG-GCGGCGCaGC- -5'
23714 5' -64.7 NC_005261.1 + 97102 0.67 0.452269
Target:  5'- cGGGGGCgccaGCCgggCCGCggccggaggCGCCGCGg-- -3'
miRNA:   3'- uCCUCCGa---CGGa--GGCG---------GCGGCGCagc -5'
23714 5' -64.7 NC_005261.1 + 97498 0.71 0.263635
Target:  5'- uGGGGGC-GCCggggCCGCCggaacguuucggcucGCCGCGaUCGg -3'
miRNA:   3'- uCCUCCGaCGGa---GGCGG---------------CGGCGC-AGC- -5'
23714 5' -64.7 NC_005261.1 + 97842 0.7 0.312093
Target:  5'- cGGGGGCgGCgggCGCCGCCGCGgcagCGc -3'
miRNA:   3'- uCCUCCGaCGgagGCGGCGGCGCa---GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.